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3APB
Biol. Unit 2
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Asym.Unit (58 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GALECTIN-8 N-TERMINAL CARBOHYDRATE RECOGNITION DOMAIN IN COMPLEX WITH IODIDE
Authors
:
T. Matsuzaka, H. Ideo, K. Yamashita, T. Nonaka
Date
:
14 Oct 10 (Deposition) - 26 Jan 11 (Release) - 26 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta-Sandwich, Galectin, Carbohydrate/Sugar Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ideo, T. Matsuzaka, T. Nonaka, A. Seko, K. Yamashita
Galectin-8-N-Domain Recognition Mechanism For Sialylated An Sulfated Glycans
To Be Published
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Hetero Components
(1, 16)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1ac: IODIDE ION (IODac)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
IOD
16
Ligand/Ion
IODIDE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC4 (SOFTWARE)
03: BC5 (SOFTWARE)
04: BC6 (SOFTWARE)
05: BC7 (SOFTWARE)
06: BC8 (SOFTWARE)
07: BC9 (SOFTWARE)
08: CC1 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:72 , ARG B:99
BINDING SITE FOR RESIDUE IOD A 155
02
AC4
SOFTWARE
HIS A:38 , ASN A:145 , IOD B:166
BINDING SITE FOR RESIDUE IOD A 159
03
BC5
SOFTWARE
ARG B:45 , GLN B:47
BINDING SITE FOR RESIDUE IOD B 157
04
BC6
SOFTWARE
HIS B:38
BINDING SITE FOR RESIDUE IOD B 159
05
BC7
SOFTWARE
THR B:22
BINDING SITE FOR RESIDUE IOD B 160
06
BC8
SOFTWARE
ARG B:99 , HOH B:202
BINDING SITE FOR RESIDUE IOD B 161
07
BC9
SOFTWARE
ASP B:112
BINDING SITE FOR RESIDUE IOD B 162
08
CC1
SOFTWARE
GLY B:142
BINDING SITE FOR RESIDUE IOD B 164
09
CC4
SOFTWARE
GLY B:131 , LYS B:134
BINDING SITE FOR RESIDUE IOD B 167
10
CC5
SOFTWARE
LYS B:111
BINDING SITE FOR RESIDUE IOD B 169
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_012990 (F19Y, chain B, )
2: VAR_009710 (R36C, chain B, )
3: VAR_012991 (V56V, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012990
F
19
Y
LEG8_HUMAN
Polymorphism
2737713
B
F
19
Y
2
UniProt
VAR_009710
R
36
C
LEG8_HUMAN
Polymorphism
1041935
B
R
36
C
3
UniProt
VAR_012991
M
56
V
LEG8_HUMAN
Polymorphism
1041937
B
V
56
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (B:19-152|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG8_HUMAN
19-152
187-317
1
-
B:19-152
-
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3apba_ (A:)
1b: SCOP_d3apbb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
automated matches
(133)
Protein domain
:
automated matches
(133)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d3apba_
A:
1b
d3apbb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain B
Asymmetric Unit 1
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Asym.Unit (58 KB)
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