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3AP7
Asym. Unit
Info
Asym.Unit (35 KB)
Biol.Unit 1 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GALECTIN-8 N-TERMINAL CARBOHYDRATE RECOGNITION DOMAIN IN COMPLEX WITH LACTOSE SIALIC ACID
Authors
:
T. Matsuzaka, H. Ideo, K. Yamashita, T. Nonaka
Date
:
12 Oct 10 (Deposition) - 26 Jan 11 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.53
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Sandwich, Galectin, Carbohydrate/Sugar Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ideo, T. Matsuzaka, T. Nonaka, A. Seko, K. Yamashita
Galectin-8-N-Domain Recognition Mechanism For Sialylated An Sulfated Glycans
J. Biol. Chem. V. 286 11346 2011
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: BETA-LACTOSE (LATa)
3a: O-SIALIC ACID (SIAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
LAT
1
Ligand/Ion
BETA-LACTOSE
3
SIA
1
Ligand/Ion
O-SIALIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:45 , HIS A:65 , ASN A:67 , ARG A:69 , ASN A:79 , GLU A:89 , SIA A:156 , HOH A:295 , HOH A:313 , HOH A:353
BINDING SITE FOR RESIDUE LAT A 155
2
AC2
SOFTWARE
ARG A:45 , GLN A:47 , ARG A:59 , TRP A:86 , LAT A:155 , HOH A:357 , HOH A:378
BINDING SITE FOR RESIDUE SIA A 156
3
AC3
SOFTWARE
ASP A:112 , HOH A:319
BINDING SITE FOR RESIDUE CL A 157
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_012990 (F19Y, chain A, )
2: VAR_009710 (R36C, chain A, )
3: VAR_012991 (V56V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012990
F
19
Y
LEG8_HUMAN
Polymorphism
2737713
A
F
19
Y
2
UniProt
VAR_009710
R
36
C
LEG8_HUMAN
Polymorphism
1041935
A
R
36
C
3
UniProt
VAR_012991
M
56
V
LEG8_HUMAN
Polymorphism
1041937
A
V
56
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:19-152|-)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG8_HUMAN
19-152
187-317
1
A:19-152
-
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Exons
(4, 4)
Info
All Exons
Exon 1.6a (A:4-15)
Exon 1.7b (A:16-45)
Exon 1.8b (A:45-115)
Exon 1.9b (A:116-154)
View:
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All Exon Boundaries
1: Boundary 1.3c/1.6a
2: Boundary 1.6a/1.7b
3: Boundary 1.7b/1.8b
4: Boundary 1.8b/1.9b
5: Boundary 1.9b/1.10e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000366584
3c
ENSE00001381502
chr1:
236686899-236687361
463
LEG8_HUMAN
-
0
0
-
-
1.6a
ENST00000366584
6a
ENSE00002193374
chr1:
236689268-236689415
148
LEG8_HUMAN
1-15
15
1
A:4-15
12
1.7b
ENST00000366584
7b
ENSE00002141991
chr1:
236700797-236700885
89
LEG8_HUMAN
16-45
30
1
A:16-45
30
1.8b
ENST00000366584
8b
ENSE00000793501
chr1:
236702179-236702389
211
LEG8_HUMAN
45-115
71
1
A:45-115
71
1.9b
ENST00000366584
9b
ENSE00000805377
chr1:
236703864-236703983
120
LEG8_HUMAN
116-155
40
1
A:116-154
39
1.10e
ENST00000366584
10e
ENSE00000793503
chr1:
236704954-236705010
57
LEG8_HUMAN
156-174
19
0
-
-
1.11c
ENST00000366584
11c
ENSE00001226656
chr1:
236706061-236706087
27
LEG8_HUMAN
175-183
9
0
-
-
1.11r
ENST00000366584
11r
ENSE00002191373
chr1:
236706860-236706948
89
LEG8_HUMAN
184-213
30
0
-
-
1.12c
ENST00000366584
12c
ENSE00000805385
chr1:
236708050-236708215
166
LEG8_HUMAN
213-268
56
0
-
-
1.14j
ENST00000366584
14j
ENSE00001911385
chr1:
236711312-236714310
2999
LEG8_HUMAN
269-317
49
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ap7a_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
automated matches
(133)
Protein domain
:
automated matches
(133)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d3ap7a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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