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3AO3
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
FRAGMENT-BASED APPROACH TO THE DESIGN OF LIGANDS TARGETING A NOVEL SITE ON HIV-1 INTEGRASE
Authors
:
J. Wielens, S. J. Headey, M. W. Parker, D. K. Chalmers, M. J. Scanlon
Date
:
20 Sep 10 (Deposition) - 09 Mar 11 (Release) - 09 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dna Integration, Aids, Integrase, Endonuclease, Polynucleotidyl Transferase, Dna Binding, Viral Protein, Rnaseh, Fragment Binding, Viral Protein-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wielens, S. J. Headey, J. J. Deadman, D. I. Rhodes, M. W. Parker, D. K. Chalmers, M. J. Scanlon
Fragment-Based Design Of Ligands Targeting A Novel Site On The Integrase Enzyme Of Human Immunodeficiency Virus 1
Chemmedchem V. 6 258 2011
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: 3-(1,3-BENZODIOXOL-5-YL)-1-METHYL-... (BMCa)
1b: 3-(1,3-BENZODIOXOL-5-YL)-1-METHYL-... (BMCb)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMC
2
Ligand/Ion
3-(1,3-BENZODIOXOL-5-YL)-1-METHYL-1H-PYRAZOLE-5-CARBOXYLIC ACID
2
CD
4
Ligand/Ion
CADMIUM ION
3
CL
2
Ligand/Ion
CHLORIDE ION
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:65 , HIS A:67 , GLU A:92 , CD A:1002 , ASP B:131
BINDING SITE FOR RESIDUE CD A 1001
02
AC2
SOFTWARE
HOH A:3 , HOH A:13 , CYS A:65 , GLU A:92 , ASP A:116 , CL A:501 , CD A:1001
BINDING SITE FOR RESIDUE CD A 1002
03
AC3
SOFTWARE
CYS A:65 , GLU A:92 , ASP A:116 , ASN A:120 , PHE A:121 , CD A:1002
BINDING SITE FOR RESIDUE CL A 501
04
AC4
SOFTWARE
HOH A:47 , TYR A:83 , ASN A:184 , HIS A:185 , ARG A:187 , SER A:195 , GLY A:197 , GLU A:198 , VAL A:201 , GLY B:106 , ARG B:107 , TRP B:108 , PRO B:109 , ILE B:204 , ASP B:207 , ILE B:208
BINDING SITE FOR RESIDUE BMC A 1
05
AC5
SOFTWARE
CYS A:65 , HIS A:67 , LYS A:159 , ARG B:127
BINDING SITE FOR RESIDUE SO4 A 213
06
AC6
SOFTWARE
HOH A:34 , LYS A:71 , HIS A:171 , LEU A:172
BINDING SITE FOR RESIDUE SO4 A 2
07
AC7
SOFTWARE
HOH A:19 , GLY A:123 , ALA A:124 , THR A:125 , ARG A:187
BINDING SITE FOR RESIDUE SO4 A 4
08
AC8
SOFTWARE
ASP A:131 , CYS B:65 , HIS B:67 , GLU B:92 , CD B:1004
BINDING SITE FOR RESIDUE CD B 1003
09
AC9
SOFTWARE
HOH B:8 , HOH B:20 , CYS B:65 , GLU B:92 , ASP B:116 , CL B:502 , CD B:1003
BINDING SITE FOR RESIDUE CD B 1004
10
BC1
SOFTWARE
CYS B:65 , GLU B:92 , ASP B:116 , ASN B:120 , PHE B:121 , CD B:1004
BINDING SITE FOR RESIDUE CL B 502
11
BC2
SOFTWARE
GLY A:106 , ARG A:107 , TRP A:108 , PRO A:109 , ASP A:207 , ILE A:208 , TYR B:83 , HIS B:185 , ARG B:187 , SER B:195 , GLY B:197 , VAL B:201 , HOH B:225
BINDING SITE FOR RESIDUE BMC B 1
12
BC3
SOFTWARE
HOH B:33 , LYS B:71 , HIS B:171 , LEU B:172
BINDING SITE FOR RESIDUE SO4 B 3
13
BC4
SOFTWARE
ARG A:127 , LYS A:188 , GLY A:189 , HOH A:225 , CYS B:65 , THR B:66 , HIS B:67 , LYS B:159
BINDING SITE FOR RESIDUE SO4 B 5
14
BC5
SOFTWARE
GLY B:123 , ALA B:124 , THR B:125 , ARG B:187 , HOH B:225
BINDING SITE FOR RESIDUE SO4 B 6
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (54 KB)
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