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3AN1
Asym. Unit
Info
Asym.Unit (466 KB)
Biol.Unit 1 (456 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RAT D428A MUTANT, URATE BOUND FORM
Authors
:
K. Okamoto, Y. Kawaguchi, B. T. Eger, E. F. Pai, T. Nishino
Date
:
27 Aug 10 (Deposition) - 01 Dec 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Product Bound Form, Oxidoreductase, Urate Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Okamoto, Y. Kawaguchi, B. T. Eger, E. F. Pai, T. Nishino
Crystal Structures Of Urate Bound Form Of Xanthine Oxidoreductase: Substrate Orientation And Structure Of The Key Reaction Intermediate
J. Am. Chem. Soc. V. 132 17080 2010
[
close entry info
]
Hetero Components
(6, 16)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
4b: FE2/S2 (INORGANIC) CLUSTER (FESb)
4c: FE2/S2 (INORGANIC) CLUSTER (FESc)
4d: FE2/S2 (INORGANIC) CLUSTER (FESd)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
6a: URIC ACID (URCa)
6b: URIC ACID (URCb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
2
Ligand/Ion
BICARBONATE ION
2
CA
4
Ligand/Ion
CALCIUM ION
3
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
FES
4
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
GOL
2
Ligand/Ion
GLYCEROL
6
URC
2
Ligand/Ion
URIC ACID
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:111 , CYS A:112 , GLY A:113 , CYS A:115 , CYS A:147 , ARG A:148 , CYS A:149 , LEU A:744
BINDING SITE FOR RESIDUE FES A 3001
02
AC2
SOFTWARE
GLY A:42 , CYS A:43 , GLY A:44 , GLY A:46 , GLY A:47 , CYS A:48 , GLY A:49 , CYS A:51 , ASN A:71 , CYS A:73
BINDING SITE FOR RESIDUE FES A 3002
03
AC3
SOFTWARE
GLU A:740 , HIS A:741 , TYR A:743 , THR A:836 , GLY A:837 , HOH A:1482
BINDING SITE FOR RESIDUE CA A 1332
04
AC4
SOFTWARE
GLY A:867 , THR A:870 , GLU A:871 , SER A:874 , SER A:907 , ASN A:908
BINDING SITE FOR RESIDUE CA A 4009
05
AC5
SOFTWARE
GLU A:45 , GLY A:46 , LYS A:255 , LEU A:256 , VAL A:257 , VAL A:258 , GLY A:259 , ASN A:260 , THR A:261 , GLU A:262 , ILE A:263 , ALA A:300 , PHE A:336 , ALA A:337 , VAL A:341 , SER A:346 , GLY A:349 , ASN A:350 , ILE A:352 , THR A:353 , SER A:358 , ASP A:359 , ILE A:402 , LEU A:403 , LYS A:421 , ASP A:429 , HOH A:1414 , HOH A:1826 , HOH A:1916 , HOH A:2052 , HOH A:2076 , HOH A:2340
BINDING SITE FOR RESIDUE FAD A 3006
06
AC6
SOFTWARE
GLU A:802 , ARG A:880 , PHE A:914 , PHE A:1009 , THR A:1010 , ALA A:1078 , ALA A:1079 , GLU A:1261 , HOH A:1581 , HOH A:1744 , HOH A:2262
BINDING SITE FOR RESIDUE URC A 1333
07
AC7
SOFTWARE
ARG A:839 , HIS A:840 , ILE A:877 , THR A:909 , ALA A:910 , PHE A:911 , PHE A:914 , GLY A:915 , GLN A:918
BINDING SITE FOR RESIDUE BCT A 1334
08
AC8
SOFTWARE
GLN A:561 , GLY A:574 , SER A:1184 , SER A:1185 , HOH A:1710 , HOH A:2010
BINDING SITE FOR RESIDUE GOL A 1335
09
AC9
SOFTWARE
GLN B:111 , CYS B:112 , GLY B:113 , CYS B:115 , CYS B:147 , ARG B:148 , CYS B:149 , LEU B:744
BINDING SITE FOR RESIDUE FES B 4001
10
BC1
SOFTWARE
GLY B:42 , CYS B:43 , GLY B:44 , GLY B:46 , GLY B:47 , CYS B:48 , GLY B:49 , CYS B:51 , ASN B:71 , CYS B:73
BINDING SITE FOR RESIDUE FES B 4002
11
BC2
SOFTWARE
GLY B:867 , THR B:870 , GLU B:871 , ASP B:872 , SER B:874 , SER B:907 , ASN B:908
BINDING SITE FOR RESIDUE CA B 4019
12
BC3
SOFTWARE
GLU B:45 , GLY B:46 , LEU B:256 , VAL B:257 , VAL B:258 , GLY B:259 , ASN B:260 , THR B:261 , GLU B:262 , ILE B:263 , ALA B:300 , PHE B:336 , ALA B:337 , ALA B:345 , SER B:346 , GLY B:349 , ASN B:350 , ILE B:352 , THR B:353 , SER B:358 , ASP B:359 , LEU B:403 , LYS B:421 , ASP B:429 , HOH B:1642 , HOH B:1666 , HOH B:1864 , HOH B:1868 , HOH B:1944 , HOH B:2271 , HOH B:2544
BINDING SITE FOR RESIDUE FAD B 4006
13
BC4
SOFTWARE
GLU B:802 , ARG B:880 , PHE B:914 , SER B:1008 , PHE B:1009 , THR B:1010 , ALA B:1078 , ALA B:1079 , GLU B:1261 , HOH B:1858 , HOH B:2074 , HOH B:2398
BINDING SITE FOR RESIDUE URC B 1332
14
BC5
SOFTWARE
ARG B:839 , HIS B:840 , ILE B:877 , THR B:909 , ALA B:910 , PHE B:911 , PHE B:914 , GLY B:915 , GLN B:918
BINDING SITE FOR RESIDUE BCT B 1333
15
BC6
SOFTWARE
GLN B:561 , GLY B:574 , SER B:1184 , SER B:1185 , HOH B:1871 , HOH B:2426
BINDING SITE FOR RESIDUE GOL B 1334
16
BC7
SOFTWARE
GLU B:740 , HIS B:741 , TYR B:743 , THR B:836 , GLY B:837 , HOH B:1392
BINDING SITE FOR RESIDUE CA B 1335
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (A:4-91,B:4-91)
2: 2FE2S_FER_1 (A:43-51,B:43-51)
3: FAD_PCMH (A:228-413,B:228-413)
4: MOLYBDOPTERIN_EUK (A:797-832,B:797-832)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
XDH_RAT
4-91
2
A:4-91
B:4-91
2
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
XDH_RAT
43-51
2
A:43-51
B:43-51
3
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
XDH_RAT
228-413
2
A:228-413
B:228-413
4
MOLYBDOPTERIN_EUK
PS00559
Eukaryotic molybdopterin oxidoreductases signature.
XDH_RAT
797-832
2
A:797-832
B:797-832
[
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]
Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (466 KB)
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