PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3ALA
Asym. Unit
Info
Asym.Unit (796 KB)
Biol.Unit 1 (235 KB)
Biol.Unit 2 (236 KB)
Biol.Unit 3 (232 KB)
Biol.Unit 4 (231 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF VASCULAR ADHESION PROTEIN-1 IN SPACE GROUP C2
Authors
:
K. E. Ernberg, A. P. Mcgrath, J. M. Guss
Date
:
29 Jul 10 (Deposition) - 15 Dec 10 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E (2x)
Biol. Unit 4: F,G (1x)
Keywords
:
Membrane Primary Amine Oxidase, Vascular Adhesion Protein-1, Vap-1, Semicarbazide-Sensitive Amine Oxidase, Ssao, Copper Containing Amine Oxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Ernberg, A. P. Mcgrath, T. S. Peat, T. E. Adams, X. Xiao, T. Pham, J. Newman, I. A. Mcdonald, C. A. Collyer, J. M. Guss
A New Crystal Form Of Human Vascular Adhesion Protein 1
Acta Crystallogr. , Sect. F V. 66 1572 2010
[
close entry info
]
Hetero Components
(9, 79)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
3d: COPPER (II) ION (CUd)
3e: COPPER (II) ION (CUe)
3f: COPPER (II) ION (CUf)
3g: COPPER (II) ION (CUg)
4a: ALPHA-L-FUCOSE (FUCa)
5a: BETA-L-FUCOSE (FULa)
5b: BETA-L-FUCOSE (FULb)
5c: BETA-L-FUCOSE (FULc)
5d: BETA-L-FUCOSE (FULd)
5e: BETA-L-FUCOSE (FULe)
5f: BETA-L-FUCOSE (FULf)
6a: GLYCEROL (GOLa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
7ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
7ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
7ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
7ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
7af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
7ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
7ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
7ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7q: N-ACETYL-D-GLUCOSAMINE (NAGq)
7r: N-ACETYL-D-GLUCOSAMINE (NAGr)
7s: N-ACETYL-D-GLUCOSAMINE (NAGs)
7t: N-ACETYL-D-GLUCOSAMINE (NAGt)
7u: N-ACETYL-D-GLUCOSAMINE (NAGu)
7v: N-ACETYL-D-GLUCOSAMINE (NAGv)
7w: N-ACETYL-D-GLUCOSAMINE (NAGw)
7x: N-ACETYL-D-GLUCOSAMINE (NAGx)
7y: N-ACETYL-D-GLUCOSAMINE (NAGy)
7z: N-ACETYL-D-GLUCOSAMINE (NAGz)
8a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
9a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
9b: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQb)
9c: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQc)
9d: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQd)
9e: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQe)
9f: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQf)
9g: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
7
Ligand/Ion
BETA-D-MANNOSE
2
CA
14
Ligand/Ion
CALCIUM ION
3
CU
7
Ligand/Ion
COPPER (II) ION
4
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
5
FUL
6
Ligand/Ion
BETA-L-FUCOSE
6
GOL
1
Ligand/Ion
GLYCEROL
7
NAG
35
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9
TPQ
7
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
[
close Hetero Component info
]
Sites
(72, 72)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:520 , HIS A:522 , HIS A:684
BINDING SITE FOR RESIDUE CU A 1762
02
AC2
SOFTWARE
LYS A:106 , ASP A:529 , LEU A:530 , ASP A:531 , ASP A:673 , LEU A:674 , HOH A:784
BINDING SITE FOR RESIDUE CA A 1763
03
AC3
SOFTWARE
GLU A:572 , LYS A:638 , PHE A:663 , ASN A:665 , GLU A:667
BINDING SITE FOR RESIDUE CA A 1764
04
AC4
SOFTWARE
PHE A:130 , ASN A:137 , SER A:139 , VAL A:157 , HOH A:810 , NAG A:1766
BINDING SITE FOR RESIDUE NAG A 1765
05
AC5
SOFTWARE
MET A:152 , NAG A:1765 , BMA A:1767
BINDING SITE FOR RESIDUE NAG A 1766
06
AC6
SOFTWARE
NAG A:1766
BINDING SITE FOR RESIDUE BMA A 1767
07
AC7
SOFTWARE
ARG A:206 , ASN A:232 , SER A:234 , NAG A:1773 , TYR B:448 , SER B:449
BINDING SITE FOR RESIDUE NAG A 1772
08
AC8
SOFTWARE
NAG A:1772 , SER B:449 , HIS B:450 , ARG B:726 , ASP B:728
BINDING SITE FOR RESIDUE NAG A 1773
09
AC9
SOFTWARE
ASN A:592 , FUL A:1771
BINDING SITE FOR RESIDUE NDG A 1769
10
BC1
SOFTWARE
NDG A:1769 , GLU B:282
BINDING SITE FOR RESIDUE FUL A 1771
11
BC2
SOFTWARE
PRO A:136 , HIS A:167 , LYS A:252
BINDING SITE FOR RESIDUE GOL A 764
12
BC3
SOFTWARE
HIS B:520 , HIS B:522 , HIS B:684 , HOH B:764
BINDING SITE FOR RESIDUE CU B 1762
13
BC4
SOFTWARE
ASP B:529 , LEU B:530 , ASP B:531 , ASP B:673 , LEU B:674
BINDING SITE FOR RESIDUE CA B 1763
14
BC5
SOFTWARE
GLU B:572 , LYS B:638 , GLU B:641 , PHE B:663 , ASN B:665 , GLU B:667
BINDING SITE FOR RESIDUE CA B 1764
15
BC6
SOFTWARE
PHE B:130 , GLN B:133 , ASN B:137 , SER B:139 , NAG B:1766
BINDING SITE FOR RESIDUE NAG B 1765
16
BC7
SOFTWARE
NAG B:1765 , BMA B:1767
BINDING SITE FOR RESIDUE NAG B 1766
17
BC8
SOFTWARE
NAG B:1766
BINDING SITE FOR RESIDUE BMA B 1767
18
BC9
SOFTWARE
VAL B:209 , ASN B:232
BINDING SITE FOR RESIDUE NAG B 1772
19
CC1
SOFTWARE
ASN B:592 , NAG B:1770 , FUL B:1771
BINDING SITE FOR RESIDUE NAG B 1769
20
CC2
SOFTWARE
NAG B:1769
BINDING SITE FOR RESIDUE NAG B 1770
21
CC3
SOFTWARE
GLU B:536 , NAG B:1769
BINDING SITE FOR RESIDUE FUL B 1771
22
CC4
SOFTWARE
HIS C:520 , HIS C:522 , HIS C:684 , HOH C:775
BINDING SITE FOR RESIDUE CU C 1762
23
CC5
SOFTWARE
ASP C:529 , LEU C:530 , ASP C:531 , ASP C:673 , LEU C:674
BINDING SITE FOR RESIDUE CA C 1763
24
CC6
SOFTWARE
GLU C:572 , LYS C:638 , GLU C:641 , PHE C:663 , ASN C:665 , GLU C:667
BINDING SITE FOR RESIDUE CA C 1764
25
CC7
SOFTWARE
PHE C:130 , GLN C:133 , ASN C:137 , SER C:139 , PRO C:163 , NAG C:1766
BINDING SITE FOR RESIDUE NAG C 1765
26
CC8
SOFTWARE
NAG C:1765 , BMA C:1767
BINDING SITE FOR RESIDUE NAG C 1766
27
CC9
SOFTWARE
NAG C:1766
BINDING SITE FOR RESIDUE BMA C 1767
28
DC1
SOFTWARE
ARG C:206 , VAL C:209 , ASN C:232 , SER C:234 , NAG C:1773 , TYR D:448 , SER D:449
BINDING SITE FOR RESIDUE NAG C 1772
29
DC2
SOFTWARE
NAG C:1772 , SER D:449 , HIS D:450 , ASP D:728
BINDING SITE FOR RESIDUE NAG C 1773
30
DC3
SOFTWARE
ASN C:592 , FUL C:1771
BINDING SITE FOR RESIDUE NAG C 1769
31
DC4
SOFTWARE
GLU A:282 , GLY C:671 , NAG C:1769
BINDING SITE FOR RESIDUE FUL C 1771
32
DC5
SOFTWARE
HIS D:520 , HIS D:522 , HIS D:684
BINDING SITE FOR RESIDUE CU D 1762
33
DC6
SOFTWARE
ASP D:529 , LEU D:530 , ASP D:531 , ASP D:673 , LEU D:674
BINDING SITE FOR RESIDUE CA D 1763
34
DC7
SOFTWARE
GLU D:572 , LYS D:638 , GLU D:641 , PHE D:663 , ASN D:665 , GLU D:667
BINDING SITE FOR RESIDUE CA D 1764
35
DC8
SOFTWARE
PHE D:130 , ASN D:137 , SER D:139 , NAG D:1766
BINDING SITE FOR RESIDUE NAG D 1765
36
DC9
SOFTWARE
MET D:152 , NAG D:1765 , BMA D:1767
BINDING SITE FOR RESIDUE NAG D 1766
37
EC1
SOFTWARE
NAG D:1766
BINDING SITE FOR RESIDUE BMA D 1767
38
EC2
SOFTWARE
ASN D:666 , HOH D:777
BINDING SITE FOR RESIDUE NAG D 1775
39
EC3
SOFTWARE
TYR C:448 , SER C:449 , ARG D:206 , ASN D:232 , SER D:234 , NAG D:1773
BINDING SITE FOR RESIDUE NAG D 1772
40
EC4
SOFTWARE
SER C:449 , HIS C:450 , ASP C:728 , NAG D:1772
BINDING SITE FOR RESIDUE NAG D 1773
41
EC5
SOFTWARE
ASN D:592 , FUL D:1771
BINDING SITE FOR RESIDUE NAG D 1769
42
EC6
SOFTWARE
NAG D:1769 , GLU G:282
BINDING SITE FOR RESIDUE FUL D 1771
43
EC7
SOFTWARE
HIS E:520 , HIS E:522 , HIS E:684
BINDING SITE FOR RESIDUE CU E 1762
44
EC8
SOFTWARE
ASP E:529 , LEU E:530 , ASP E:531 , ASP E:673 , LEU E:674
BINDING SITE FOR RESIDUE CA E 1763
45
EC9
SOFTWARE
GLU E:572 , LYS E:638 , GLU E:641 , PHE E:663 , ASN E:665 , GLU E:667 , HOH E:772
BINDING SITE FOR RESIDUE CA E 1764
46
FC1
SOFTWARE
GLN E:133 , ASN E:137 , SER E:139 , PRO E:163 , NAG E:1766
BINDING SITE FOR RESIDUE NAG E 1765
47
FC2
SOFTWARE
NAG E:1765 , BMA E:1767
BINDING SITE FOR RESIDUE NAG E 1766
48
FC3
SOFTWARE
NAG E:1766
BINDING SITE FOR RESIDUE BMA E 1767
49
FC4
SOFTWARE
ARG E:206 , ASN E:232 , SER E:234 , SER E:449 , NAG E:1773
BINDING SITE FOR RESIDUE NAG E 1772
50
FC5
SOFTWARE
HIS E:450 , ASP E:728 , NAG E:1772
BINDING SITE FOR RESIDUE NAG E 1773
51
FC6
SOFTWARE
ASN E:592 , FUL E:1771
BINDING SITE FOR RESIDUE NAG E 1769
52
FC7
SOFTWARE
NAG E:1769 , GLU F:282
BINDING SITE FOR RESIDUE FUL E 1771
53
FC8
SOFTWARE
HIS F:520 , HIS F:522 , HIS F:684
BINDING SITE FOR RESIDUE CU F 1762
54
FC9
SOFTWARE
LYS F:106 , ASP F:529 , LEU F:530 , ASP F:531 , ASP F:673 , LEU F:674
BINDING SITE FOR RESIDUE CA F 1763
55
GC1
SOFTWARE
LYS F:638 , GLU F:641 , PHE F:663 , ASN F:665 , GLU F:667
BINDING SITE FOR RESIDUE CA F 1764
56
GC2
SOFTWARE
PHE F:130 , GLN F:133 , ASN F:137 , SER F:139 , VAL F:157 , PRO F:163 , NAG F:1766
BINDING SITE FOR RESIDUE NAG F 1765
57
GC3
SOFTWARE
NAG F:1765 , BMA F:1767
BINDING SITE FOR RESIDUE NAG F 1766
58
GC4
SOFTWARE
NAG F:1766
BINDING SITE FOR RESIDUE BMA F 1767
59
GC5
SOFTWARE
ASN F:232 , SER F:234 , NAG F:1773 , TYR G:448 , SER G:449
BINDING SITE FOR RESIDUE NAG F 1772
60
GC6
SOFTWARE
NAG F:1772 , ASP G:728
BINDING SITE FOR RESIDUE NAG F 1773
61
GC7
SOFTWARE
ASN F:592 , HIS F:593 , FUL F:1771
BINDING SITE FOR RESIDUE NAG F 1769
62
GC8
SOFTWARE
NAG F:1769
BINDING SITE FOR RESIDUE FUL F 1771
63
GC9
SOFTWARE
HIS G:520 , HIS G:522 , HIS G:684
BINDING SITE FOR RESIDUE CU G 1762
64
HC1
SOFTWARE
ASP G:529 , LEU G:530 , ASP G:531 , LEU G:535 , ASP G:673 , LEU G:674
BINDING SITE FOR RESIDUE CA G 1763
65
HC2
SOFTWARE
GLU G:572 , LYS G:638 , GLU G:641 , PHE G:663 , ASN G:665 , GLU G:667
BINDING SITE FOR RESIDUE CA G 1764
66
HC3
SOFTWARE
PHE G:130 , GLN G:133 , ASN G:137 , SER G:139 , ASP G:154 , THR G:156 , PRO G:163 , NAG G:1766
BINDING SITE FOR RESIDUE NAG G 1765
67
HC4
SOFTWARE
LEU G:79 , PHE G:130 , MET G:152 , NAG G:1765 , BMA G:1767
BINDING SITE FOR RESIDUE NAG G 1766
68
HC5
SOFTWARE
NAG G:1766
BINDING SITE FOR RESIDUE BMA G 1767
69
HC6
SOFTWARE
TYR F:448 , ARG G:206 , ASN G:232 , NAG G:1773
BINDING SITE FOR RESIDUE NAG G 1772
70
HC7
SOFTWARE
SER F:449 , HIS F:450 , ARG F:726 , ASP F:728 , NAG G:1772
BINDING SITE FOR RESIDUE NAG G 1773
71
HC8
SOFTWARE
GLU E:282 , HOH G:8 , ASN G:592 , FUC G:1771
BINDING SITE FOR RESIDUE NAG G 1769
72
HC9
SOFTWARE
GLU E:282 , NAG G:1769
BINDING SITE FOR RESIDUE FUC G 1771
[
close Site info
]
SAPs(SNPs)/Variants
(12, 84)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_052603 (R78Q, chain A/B/C/D/E/F/G, )
02: VAR_025027 (H167Y, chain A/B/C/D/E/F/G, )
03: VAR_052604 (V171M, chain A/B/C/D/E/F/G, )
04: VAR_012064 (Y317H, chain A/B/C/D/E/F/G, )
05: VAR_024343 (R329Q, chain A/B/C/D/E/F/G, )
06: VAR_025028 (I371T, chain A/B/C/D/E/F/G, )
07: VAR_025029 (A408S, chain A/B/C/D/E/F/G, )
08: VAR_025030 (R426H, chain A/B/C/D/E/F/G, )
09: VAR_025031 (R441W, chain A/B/C/D/E/F/G, )
10: VAR_025032 (A582T, chain A/B/C/D/E/F/G, )
11: VAR_025033 (G700S, chain A/B/C/D/E/F/G, )
12: VAR_025034 (A749V, chain A/B/C/D/E/F/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_052603
R
78
Q
AOC3_HUMAN
Polymorphism
402680
A/B/C/D/E/F/G
R
78
Q
02
UniProt
VAR_025027
H
167
Y
AOC3_HUMAN
Polymorphism
2228470
A/B/C/D/E/F/G
H
167
Y
03
UniProt
VAR_052604
V
171
M
AOC3_HUMAN
Polymorphism
408038
A/B/C/D/E/F/G
V
171
M
04
UniProt
VAR_012064
Y
317
H
AOC3_HUMAN
Polymorphism
438287
A/B/C/D/E/F/G
Y
317
H
05
UniProt
VAR_024343
R
329
Q
AOC3_HUMAN
Polymorphism
2229595
A/B/C/D/E/F/G
R
329
Q
06
UniProt
VAR_025028
I
371
T
AOC3_HUMAN
Polymorphism
35097308
A/B/C/D/E/F/G
I
371
T
07
UniProt
VAR_025029
A
408
S
AOC3_HUMAN
Polymorphism
35643019
A/B/C/D/E/F/G
A
408
S
08
UniProt
VAR_025030
R
426
H
AOC3_HUMAN
Polymorphism
33986943
A/B/C/D/E/F/G
R
426
H
09
UniProt
VAR_025031
R
441
W
AOC3_HUMAN
Polymorphism
2229596
A/B/C/D/E/F/G
R
441
W
10
UniProt
VAR_025032
A
582
T
AOC3_HUMAN
Polymorphism
34987927
A/B/C/D/E/F/G
A
582
T
11
UniProt
VAR_025033
G
700
S
AOC3_HUMAN
Polymorphism
477207
A/B/C/D/E/F/G
G
700
S
12
UniProt
VAR_025034
A
749
V
AOC3_HUMAN
Polymorphism
34012919
A/B/C/D/E/F/G
A
749
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:460-473,B:460-473,C:460-473,D:46...)
2: COPPER_AMINE_OXID_2 (A:679-692,B:679-692,C:679-692,D:67...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
AOC3_HUMAN
460-473
7
A:460-473
B:460-473
C:460-473
D:460-473
E:460-473
F:460-473
G:460-473
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
AOC3_HUMAN
679-692
7
A:679-692
B:679-692
C:679-692
D:679-692
E:679-692
F:679-692
G:679-692
[
close PROSITE info
]
Exons
(4, 28)
Info
All Exons
Exon 1.1 (A:39-534 (gaps) | B:39-534 (gaps) ...)
Exon 1.2 (A:534-629 | B:534-629 | C:534-629 ...)
Exon 1.3 (A:629-672 | B:629-672 | C:629-672 ...)
Exon 1.4 (A:673-761 | B:673-761 | C:673-762 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000308423
1
ENSE00001213814
chr17:
41003201-41004960
1760
AOC3_HUMAN
1-534
534
7
A:39-534 (gaps)
B:39-534 (gaps)
C:35-534 (gaps)
D:36-534 (gaps)
E:39-534 (gaps)
F:41-534 (gaps)
G:38-534 (gaps)
496
496
500
499
496
494
497
1.2
ENST00000308423
2
ENSE00000899074
chr17:
41006465-41006750
286
AOC3_HUMAN
534-629
96
7
A:534-629
B:534-629
C:534-629
D:534-629
E:534-629
F:534-629
G:534-629
96
96
96
96
96
96
96
1.3
ENST00000308423
3
ENSE00001213800
chr17:
41007461-41007590
130
AOC3_HUMAN
629-672
44
7
A:629-672
B:629-672
C:629-672
D:629-672
E:629-672
F:629-672
G:629-672
44
44
44
44
44
44
44
1.4
ENST00000308423
4
ENSE00001178316
chr17:
41008292-41010138
1847
AOC3_HUMAN
673-763
91
7
A:673-761
B:673-761
C:673-762
D:673-762
E:673-761
F:673-761
G:673-761
89
89
90
90
89
89
89
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (796 KB)
Header - Asym.Unit
Biol.Unit 1 (235 KB)
Header - Biol.Unit 1
Biol.Unit 2 (236 KB)
Header - Biol.Unit 2
Biol.Unit 3 (232 KB)
Header - Biol.Unit 3
Biol.Unit 4 (231 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3ALA
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help