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3AL2
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TOPBP1 BRCT7/8
Authors
:
C. C. Leung, J. N. Glover
Date
:
22 Jul 10 (Deposition) - 01 Dec 10 (Release) - 30 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Brct Domain, Protein Binding, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. C. Leung, Z. Gong, J. Chen, J. N. Glover
Molecular Basis Of Bach1/Fancj Recognition By Topbp1 In Dna Replication Checkpoint Control
J. Biol. Chem. V. 286 4292 2011
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:121 , HOH A:122 , HOH A:128 , LEU A:1272 , SER A:1273 , SER A:1274 , ARG A:1280 , GLN A:1298 , LYS A:1317
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
HOH A:49 , ALA A:1409 , ARG A:1413
BINDING SITE FOR RESIDUE SO4 A 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(6, 6)
Info
All Exons
Exon 1.22b (A:1266-1291)
Exon 1.23 (A:1291-1345)
Exon 1.24 (A:1346-1391)
Exon 1.25 (A:1392-1421)
Exon 1.26 (A:1422-1475 (gaps))
Exon 1.27 (A:1476-1493)
View:
Select:
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All Exon Boundaries
1: Boundary 1.21b/1.22b
2: Boundary 1.22b/1.23
3: Boundary 1.23/1.24
4: Boundary 1.24/1.25
5: Boundary 1.25/1.26
6: Boundary 1.26/1.27
7: Boundary 1.27/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000260810
1
ENSE00001289464
chr3:
133380737-133380613
125
TOPB1_HUMAN
-
0
0
-
-
1.2
ENST00000260810
2
ENSE00000933924
chr3:
133379978-133379888
91
TOPB1_HUMAN
1-28
28
0
-
-
1.3
ENST00000260810
3
ENSE00001018318
chr3:
133377994-133377860
135
TOPB1_HUMAN
29-73
45
0
-
-
1.4
ENST00000260810
4
ENSE00000933926
chr3:
133376785-133376642
144
TOPB1_HUMAN
74-121
48
0
-
-
1.5a
ENST00000260810
5a
ENSE00000933927
chr3:
133375701-133375520
182
TOPB1_HUMAN
122-182
61
0
-
-
1.6
ENST00000260810
6
ENSE00001078162
chr3:
133374330-133374134
197
TOPB1_HUMAN
182-248
67
0
-
-
1.7
ENST00000260810
7
ENSE00001078164
chr3:
133372368-133372189
180
TOPB1_HUMAN
248-308
61
0
-
-
1.8a
ENST00000260810
8a
ENSE00001289360
chr3:
133371473-133371307
167
TOPB1_HUMAN
308-363
56
0
-
-
1.9b
ENST00000260810
9b
ENSE00001289349
chr3:
133368787-133368624
164
TOPB1_HUMAN
364-418
55
0
-
-
1.9d
ENST00000260810
9d
ENSE00001289339
chr3:
133368477-133368227
251
TOPB1_HUMAN
418-502
85
0
-
-
1.10c
ENST00000260810
10c
ENSE00001078161
chr3:
133363207-133362864
344
TOPB1_HUMAN
502-616
115
0
-
-
1.11
ENST00000260810
11
ENSE00000933934
chr3:
133362216-133362044
173
TOPB1_HUMAN
617-674
58
0
-
-
1.12
ENST00000260810
12
ENSE00001078166
chr3:
133359014-133358803
212
TOPB1_HUMAN
674-745
72
0
-
-
1.13
ENST00000260810
13
ENSE00001150558
chr3:
133357006-133356720
287
TOPB1_HUMAN
745-840
96
0
-
-
1.14a
ENST00000260810
14a
ENSE00001150552
chr3:
133347577-133347404
174
TOPB1_HUMAN
841-898
58
0
-
-
1.15a
ENST00000260810
15a
ENSE00000933939
chr3:
133347315-133347206
110
TOPB1_HUMAN
899-935
37
0
-
-
1.16
ENST00000260810
16
ENSE00000933940
chr3:
133343019-133342896
124
TOPB1_HUMAN
935-976
42
0
-
-
1.17
ENST00000260810
17
ENSE00001078177
chr3:
133342301-133342155
147
TOPB1_HUMAN
977-1025
49
0
-
-
1.18
ENST00000260810
18
ENSE00001078179
chr3:
133342037-133341935
103
TOPB1_HUMAN
1026-1060
35
0
-
-
1.19
ENST00000260810
19
ENSE00000933943
chr3:
133339191-133338999
193
TOPB1_HUMAN
1060-1124
65
0
-
-
1.20a
ENST00000260810
20a
ENSE00001289481
chr3:
133337277-133337057
221
TOPB1_HUMAN
1124-1198
75
0
-
-
1.21b
ENST00000260810
21b
ENSE00000933945
chr3:
133336170-133336004
167
TOPB1_HUMAN
1198-1253
56
0
-
-
1.22b
ENST00000260810
22b
ENSE00000933946
chr3:
133335769-133335658
112
TOPB1_HUMAN
1254-1291
38
1
A:1266-1291
26
1.23
ENST00000260810
23
ENSE00000933947
chr3:
133331396-133331233
164
TOPB1_HUMAN
1291-1345
55
1
A:1291-1345
55
1.24
ENST00000260810
24
ENSE00000933948
chr3:
133329985-133329848
138
TOPB1_HUMAN
1346-1391
46
1
A:1346-1391
46
1.25
ENST00000260810
25
ENSE00000933949
chr3:
133327806-133327717
90
TOPB1_HUMAN
1392-1421
30
1
A:1392-1421
30
1.26
ENST00000260810
26
ENSE00001150487
chr3:
133327540-133327379
162
TOPB1_HUMAN
1422-1475
54
1
A:1422-1475 (gaps)
54
1.27
ENST00000260810
27
ENSE00001289455
chr3:
133320237-133319417
821
TOPB1_HUMAN
1476-1522
47
1
A:1476-1493
18
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Pfam Domains
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (86 KB)
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