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3AK1
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
SUPEROXIDE DISMUTASE FROM AEROPYRUM PERNIX K1, APO-FORM
Authors
:
T. Nakamura, K. Uegaki
Date
:
30 Jun 10 (Deposition) - 02 Feb 11 (Release) - 23 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.57
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Superoxide Dismutase, Cambialistic, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nakamura, K. Torikai, K. Uegaki, J. Morita, K. Machida, A. Suzuki, Y. Kawata
Crystal Structure Of The Cambialistic Superoxide Dismutase From Aeropyrum Pernix K1 - Insights Into The Enzyme Mechanism And Stability
Febs J. V. 278 598 2011
[
close entry info
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Hetero Components
(1, 26)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
26
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:11 , LEU A:12 , TYR A:14 , TYR A:16 , HOH A:311
BINDING SITE FOR RESIDUE EDO A 215
02
AC2
SOFTWARE
GLU A:20 , ILE B:24 , LEU B:173 , GLN B:174 , EDO B:217 , HOH B:424
BINDING SITE FOR RESIDUE EDO A 216
03
AC3
SOFTWARE
ASN A:15 , ASN A:17 , EDO B:216 , EDO B:217
BINDING SITE FOR RESIDUE EDO A 217
04
AC4
SOFTWARE
ILE A:23 , MET A:28 , HIS A:31 , PHE A:82 , ALA A:170 , TYR A:182
BINDING SITE FOR RESIDUE EDO A 218
05
AC5
SOFTWARE
HIS A:35 , THR A:38 , HOH A:259 , HOH A:290 , HOH A:447 , ASN C:177
BINDING SITE FOR RESIDUE EDO A 219
06
AC6
SOFTWARE
LEU A:47 , GLU A:51 , HOH A:396 , HOH A:601 , GLN B:107 , ARG B:143
BINDING SITE FOR RESIDUE EDO A 220
07
AC7
SOFTWARE
HIS A:53 , HOH A:271 , HOH A:538 , ALA B:116 , LEU B:117 , ALA B:120
BINDING SITE FOR RESIDUE EDO A 221
08
AC8
SOFTWARE
ARG A:143 , ILE A:144 , HOH A:508 , LEU B:47 , PHE B:69
BINDING SITE FOR RESIDUE EDO A 222
09
AC9
SOFTWARE
GLY A:127 , GLU A:168 , ARG A:179 , HOH A:567 , TRP C:167
BINDING SITE FOR RESIDUE EDO A 223
10
BC1
SOFTWARE
PRO B:11 , LEU B:12 , TYR B:14 , TYR B:16 , HIS B:32 , HOH B:272
BINDING SITE FOR RESIDUE EDO B 215
11
BC2
SOFTWARE
EDO A:217 , PRO B:21 , ASN B:185 , EDO B:217 , HOH B:221
BINDING SITE FOR RESIDUE EDO B 216
12
BC3
SOFTWARE
ASN A:17 , GLU A:20 , EDO A:216 , EDO A:217 , HOH A:300 , GLN B:174 , EDO B:216 , HOH B:464
BINDING SITE FOR RESIDUE EDO B 217
13
BC4
SOFTWARE
ALA B:64 , ASP B:68 , HOH B:225 , HOH B:257 , ASP C:61
BINDING SITE FOR RESIDUE EDO B 218
14
BC5
SOFTWARE
GLU B:148 , LYS B:149 , GLU D:148 , LYS D:149
BINDING SITE FOR RESIDUE EDO B 219
15
BC6
SOFTWARE
VAL B:125 , GLY B:127 , GLU B:168 , ARG B:179 , HOH B:336 , HOH B:513 , TRP D:167 , HOH D:293 , HOH D:586
BINDING SITE FOR RESIDUE EDO B 220
16
BC7
SOFTWARE
GLU A:148 , GLU C:148 , EDO C:218
BINDING SITE FOR RESIDUE EDO C 215
17
BC8
SOFTWARE
ALA B:64 , ARG B:67 , ASP B:68 , HOH B:248 , ALA C:64 , ARG C:67 , ASP C:68 , HOH C:263
BINDING SITE FOR RESIDUE EDO C 216
18
BC9
SOFTWARE
GLN C:107 , PHE C:108 , LEU C:142 , ARG C:143 , HOH C:284 , HOH C:289 , HOH C:374
BINDING SITE FOR RESIDUE EDO C 217
19
CC1
SOFTWARE
VAL A:128 , LYS A:149 , GLU C:126 , GLY C:127 , VAL C:128 , GLU C:148 , LYS C:149 , EDO C:215 , HOH C:400
BINDING SITE FOR RESIDUE EDO C 218
20
CC2
SOFTWARE
TYR C:7 , GLU C:8 , HIS C:76 , HOH C:477
BINDING SITE FOR RESIDUE EDO C 219
21
CC3
SOFTWARE
PRO D:11 , LEU D:12 , TYR D:14 , TYR D:16
BINDING SITE FOR RESIDUE EDO D 215
22
CC4
SOFTWARE
ASN B:177 , LYS D:34 , HIS D:35 , THR D:38 , HOH D:266 , HOH D:293 , HOH D:569 , HOH D:611
BINDING SITE FOR RESIDUE EDO D 216
23
CC5
SOFTWARE
LYS D:55 , GLU D:57
BINDING SITE FOR RESIDUE EDO D 217
24
CC6
SOFTWARE
PRO D:96 , GLY D:97 , GLY D:98 , TRP D:192 , ASP D:193 , GLU D:196
BINDING SITE FOR RESIDUE EDO D 218
25
CC7
SOFTWARE
HIS B:35 , GLU D:168 , TYR D:171 , TYR D:172 , ASN D:177 , HOH D:270 , HOH D:387
BINDING SITE FOR RESIDUE EDO D 219
26
CC8
SOFTWARE
GLY D:56 , ILE D:58 , GLN D:59 , HOH D:239
BINDING SITE FOR RESIDUE EDO D 220
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SOD_MN (A:165-172,B:165-172,C:165-172,D:16...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_MN
PS00088
Manganese and iron superoxide dismutases signature.
SODF_AERPE
165-172
4
A:165-172
B:165-172
C:165-172
D:165-172
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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