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3AJO
Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (819 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF WILD-TYPE HUMAN FERRITIN H CHAIN
Authors
:
T. Masuda, B. Mikami
Date
:
11 Jun 10 (Deposition) - 25 Aug 10 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.52
Chains
:
Asym. Unit : A
Biol. Unit 1: A (24x)
Keywords
:
4-Helix Bundle, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Masuda, F. Goto, T. Yoshihara, B. Mikami
The Universal Mechanism For Iron Translocation To The Ferroxidase Site In Ferritin, Which Is Mediated By The Well Conserved Transit Site
Biochem. Biophys. Res. Commun. V. 400 94 2010
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
12
Ligand/Ion
MAGNESIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:27 , GLU A:62 , HIS A:65 , HOH A:236 , HOH A:278 , HOH A:279
BINDING SITE FOR RESIDUE MG A 183
02
AC2
SOFTWARE
GLN A:58 , GLU A:61 , HOH A:280 , HOH A:281 , HOH A:282 , HOH A:399
BINDING SITE FOR RESIDUE MG A 184
03
AC3
SOFTWARE
HOH A:302 , HOH A:303 , HOH A:305 , HOH A:306
BINDING SITE FOR RESIDUE MG A 185
04
AC4
SOFTWARE
HOH A:255 , HOH A:262
BINDING SITE FOR RESIDUE MG A 186
05
AC5
SOFTWARE
HOH A:321 , HOH A:322 , HOH A:323 , HOH A:324 , HOH A:325 , HOH A:326
BINDING SITE FOR RESIDUE MG A 187
06
AC6
SOFTWARE
ASP A:131 , HOH A:377
BINDING SITE FOR RESIDUE MG A 188
07
AC7
SOFTWARE
HIS A:173
BINDING SITE FOR RESIDUE MG A 189
08
AC8
SOFTWARE
HIS A:173
BINDING SITE FOR RESIDUE MG A 190
09
AC9
SOFTWARE
ASN A:25 , GLN A:83
BINDING SITE FOR RESIDUE MG A 191
10
BC1
SOFTWARE
ARG A:9 , ASN A:11 , TYR A:12
BINDING SITE FOR RESIDUE MG A 192
11
BC2
SOFTWARE
GLN A:75 , HOH A:301 , HOH A:327
BINDING SITE FOR RESIDUE MG A 193
12
BC3
SOFTWARE
TRP A:93 , CYS A:102
BINDING SITE FOR RESIDUE MG A 194
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:10-159)
2: FERRITIN_1 (A:61-79)
3: FERRITIN_2 (A:126-146)
;
View:
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIH_HUMAN
11-160
1
A:10-159
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIH_HUMAN
62-80
1
A:61-79
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIH_HUMAN
127-147
1
A:126-146
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:5-37)
Exon 1.3b (A:38-86)
Exon 1.3e (A:87-128)
Exon 1.3l (A:129-176)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3b
3: Boundary 1.3b/1.3e
4: Boundary 1.3e/1.3l
5: Boundary 1.3l/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000273550
1a
ENSE00001408170
chr11:
61735132-61734784
349
FRIH_HUMAN
1-38
38
1
A:5-37
33
1.3b
ENST00000273550
3b
ENSE00001119153
chr11:
61732987-61732841
147
FRIH_HUMAN
39-87
49
1
A:38-86
49
1.3e
ENST00000273550
3e
ENSE00001119152
chr11:
61732584-61732459
126
FRIH_HUMAN
88-129
42
1
A:87-128
42
1.3l
ENST00000273550
3l
ENSE00001430448
chr11:
61732363-61731757
607
FRIH_HUMAN
130-183
54
1
A:129-176
48
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ajoa_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
automated matches
(70)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d3ajoa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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