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3AI3
Asym. Unit
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Asym.Unit (178 KB)
Biol.Unit 1 (172 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH AND L-SORBOSE
Authors
:
K. Kubota, K. Nagata, M. Okai, K. Miyazono, M. Tanokura
Date
:
07 May 10 (Deposition) - 09 Feb 11 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,C,E,G
Biol. Unit 1: A,C,E,G (1x)
Keywords
:
Rossmann-Fold, Nadph-Dependent Reductase, Short Chain Dehydrogenase/Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kubota, K. Nagata, M. Okai, K. Miyazono, W. Soemphol, J. Ohtsuka, A. Yamamura, N. Saichana, H. Toyama, K. Matsushita, M. Tanokura
The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose
J. Mol. Biol. V. 407 543 2011
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
1b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
1c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
1d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
2a: ALPHA-L-SORBOPYRANOSE (SOEa)
2b: ALPHA-L-SORBOPYRANOSE (SOEb)
2c: ALPHA-L-SORBOPYRANOSE (SOEc)
2d: ALPHA-L-SORBOPYRANOSE (SOEd)
3a: L-SORBOSE (SOLa)
3b: L-SORBOSE (SOLb)
3c: L-SORBOSE (SOLc)
3d: L-SORBOSE (SOLd)
3e: L-SORBOSE (SOLe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2
SOE
4
Ligand/Ion
ALPHA-L-SORBOPYRANOSE
3
SOL
5
Ligand/Ion
L-SORBOSE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SOL A:0 , GLY A:14 , SER A:16 , SER A:17 , GLY A:18 , ILE A:19 , ALA A:38 , ARG A:39 , GLN A:40 , ARG A:43 , VAL A:64 , ASP A:65 , VAL A:66 , ASN A:92 , GLY A:94 , LEU A:115 , ASN A:142 , ALA A:143 , SER A:144 , TYR A:157 , LYS A:161 , PRO A:187 , GLY A:188 , ILE A:190 , THR A:192 , TRP A:195 , HOH A:276 , HOH A:310 , HOH A:315
BINDING SITE FOR RESIDUE NDP A 270
02
AC2
SOFTWARE
GLY A:96 , SER A:144 , ILE A:145 , LEU A:151 , TYR A:153 , GLU A:154 , TYR A:157 , GLY A:188 , TRP A:195 , NDP A:270
BINDING SITE FOR RESIDUE SOL A 0
03
AC3
SOFTWARE
SOL C:0 , GLY C:14 , SER C:16 , SER C:17 , GLY C:18 , ILE C:19 , ALA C:38 , ARG C:39 , GLN C:40 , ARG C:43 , VAL C:64 , ASP C:65 , VAL C:66 , ASN C:92 , GLY C:94 , LEU C:115 , ASN C:142 , ALA C:143 , TYR C:157 , LYS C:161 , PRO C:187 , GLY C:188 , ILE C:190 , THR C:192 , PRO C:193 , TRP C:195 , HOH C:285 , HOH C:298 , HOH C:431 , HOH C:453 , HOH C:489
BINDING SITE FOR RESIDUE NDP C 270
04
AC4
SOFTWARE
GLY C:96 , SER C:144 , ILE C:145 , TYR C:153 , GLU C:154 , TYR C:157 , TRP C:195 , NDP C:270 , HOH C:589
BINDING SITE FOR RESIDUE SOL C 0
05
AC5
SOFTWARE
SOL E:0 , GLY E:14 , SER E:16 , SER E:17 , GLY E:18 , ILE E:19 , ALA E:38 , ARG E:39 , GLN E:40 , ARG E:43 , VAL E:64 , ASP E:65 , VAL E:66 , ASN E:92 , ALA E:93 , GLY E:94 , LEU E:115 , ASN E:142 , ALA E:143 , SER E:144 , TYR E:157 , LYS E:161 , PRO E:187 , GLY E:188 , ILE E:190 , THR E:192 , TRP E:195 , HOH E:291 , HOH E:296 , HOH E:301 , HOH E:321 , HOH E:353
BINDING SITE FOR RESIDUE NDP E 270
06
AC6
SOFTWARE
GLY E:96 , SER E:144 , ILE E:145 , GLU E:154 , TYR E:157 , NDP E:270 , HOH E:590
BINDING SITE FOR RESIDUE SOL E 0
07
AC7
SOFTWARE
GLY E:4 , ILE E:5 , LYS E:8 , ILE E:88 , GLY E:137 , ASN E:179 , ARG E:181 , CYS E:241 , GLU E:243 , HOH E:320
BINDING SITE FOR RESIDUE SOE E 264
08
AC8
SOFTWARE
VAL A:148 , ALA A:252 , PHE A:254 , LEU A:263 , ALA E:252 , LEU E:263 , HOH E:327
BINDING SITE FOR RESIDUE SOL E 265
09
AC9
SOFTWARE
SOL G:0 , GLY G:14 , SER G:16 , SER G:17 , GLY G:18 , ILE G:19 , ALA G:38 , ARG G:39 , GLN G:40 , ARG G:43 , VAL G:64 , ASP G:65 , VAL G:66 , ASN G:92 , GLY G:94 , LEU G:115 , ASN G:142 , ALA G:143 , TYR G:157 , LYS G:161 , PRO G:187 , GLY G:188 , ILE G:190 , THR G:192 , TRP G:195 , HOH G:294 , HOH G:452 , HOH G:470 , HOH G:521
BINDING SITE FOR RESIDUE NDP G 270
10
BC1
SOFTWARE
GLY G:96 , SER G:144 , ILE G:145 , CYS G:146 , TYR G:153 , GLU G:154 , TYR G:157 , GLY G:188 , TRP G:195 , NDP G:270
BINDING SITE FOR RESIDUE SOL G 0
11
BC2
SOFTWARE
VAL C:41 , HIS C:45 , HIS G:45 , ALA G:48 , ARG G:49 , LYS G:52 , VAL G:59 , GLU G:61 , HOH G:281 , HOH G:414
BINDING SITE FOR RESIDUE SOE G 264
12
BC3
SOFTWARE
GLY G:4 , ILE G:5 , LYS G:8 , ILE G:88 , GLY G:137 , ASN G:179 , ARG G:181 , CYS G:241 , GLU G:243 , HOH G:488
BINDING SITE FOR RESIDUE SOE G 265
13
BC4
SOFTWARE
ALA C:252 , PHE C:254 , LEU C:263 , ALA G:252 , PHE G:254 , LEU G:260 , LEU G:263 , HOH G:272 , HOH G:416
BINDING SITE FOR RESIDUE SOE G 266
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ai3a_ (A:)
1b: SCOP_d3ai3e_ (E:)
1c: SCOP_d3ai3g_ (G:)
1d: SCOP_d3ai3c_ (C:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Gluconobacter frateurii [TaxId: 38308]
(3)
1a
d3ai3a_
A:
1b
d3ai3e_
E:
1c
d3ai3g_
G:
1d
d3ai3c_
C:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (178 KB)
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