PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3AH8
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (116 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF HETEROTRIMERIC G PROTEIN GALPHA-Q BETA GAMMA IN COMPLEX WITH AN INHIBITOR YM-254890
Authors
:
A. Nishimura, K. Kitano, J. Takasaki, M. Taniguchi, N. Mizuno, K. Tago, T. Hakoshima, H. Itoh
Date
:
20 Apr 10 (Deposition) - 21 Jul 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,G,Y
Biol. Unit 1: A,B,G,Y (1x)
Keywords
:
Heterotrimeric G Protein, Gtpase, Galpha-Q, Gbeta, Ggamma, Inhibitor, Ym-254890, Signaling Protein, Signaling Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Nishimura, K. Kitano, J. Takasaki, M. Taniguchi, N. Mizuno, K. Tago T. Hakoshima, H. Itoh
Structural Basis For The Specific Inhibition Of Heterotrimeric Gq Protein By A Small Molecule.
Proc. Natl. Acad. Sci. Usa V. 107 13666 2010
[
close entry info
]
Hetero Components
(8, 9)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: N-METHYL-ALPHA-BETA-DEHYDROALANINE (DAMa)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4a: (2R)-2-HYDROXY-3-PHENYLPROPANOIC A... (HF2a)
5a: (2S,3R)-2-AMINO-3-HYDROXY-4-METHYL... (HL2a)
5b: (2S,3R)-2-AMINO-3-HYDROXY-4-METHYL... (HL2b)
6a: N-METHYL-L-ALANINE (MAAa)
7a: N,O-DIMETHYL-L-THREONINE (OTHa)
8a: N-METHYLCARBONYLTHREONINE (THCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
DAM
1
Mod. Amino Acid
N-METHYL-ALPHA-BETA-DEHYDROALANINE
3
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
HF2
1
Mod. Amino Acid
(2R)-2-HYDROXY-3-PHENYLPROPANOIC ACID
5
HL2
2
Mod. Amino Acid
(2S,3R)-2-AMINO-3-HYDROXY-4-METHYLPENTANOIC ACID
6
MAA
1
Mod. Amino Acid
N-METHYL-L-ALANINE
7
OTH
1
Mod. Amino Acid
N,O-DIMETHYL-L-THREONINE
8
THC
1
Mod. Amino Acid
N-METHYLCARBONYLTHREONINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:47 , GLY A:48 , GLU A:49 , SER A:50 , GLY A:51 , LYS A:52 , SER A:53 , THR A:54 , SER A:156 , LEU A:180 , ARG A:181 , ARG A:183 , ASN A:274 , LYS A:275 , ASP A:277 , CYS A:330 , ALA A:331 , THR A:332
BINDING SITE FOR RESIDUE GDP A 1
2
AC2
SOFTWARE
LYS A:57 , ARG A:60 , TYR A:67 , ASP A:71 , GLY A:74 , PHE A:75 , VAL A:184 , THR A:187 , ILE A:189 , ILE A:190 , GLU A:191 , TYR A:192 , ARG B:96
BINDING SITE FOR CHAIN Y OF YM-254890
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (B:70-84|B:157-171|B:285-299)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
GBB1_BOVIN
70-84
157-171
285-299
3
B:70-84
B:157-171
B:285-299
[
close PROSITE info
]
Exons
(11, 11)
Info
All Exons
Exon 1.3 (G:18-36)
Exon 1.4 (G:37-67)
Exon 2.3 (B:11-19)
Exon 2.4 (B:20-32)
Exon 2.5 (B:33-68)
Exon 2.6 (B:68-89)
Exon 2.7 (B:90-144)
Exon 2.8 (B:144-166)
Exon 2.9 (B:166-233)
Exon 2.10 (B:234-306)
Exon 2.11 (B:306-340)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/-
04: Boundary 2.1/2.3
05: Boundary 2.3/2.4
06: Boundary 2.4/2.5
07: Boundary 2.5/2.6
08: Boundary 2.6/2.7
09: Boundary 2.7/2.8
10: Boundary 2.8/2.9
11: Boundary 2.9/2.10
12: Boundary 2.10/2.11
13: Boundary 2.11/2.12b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000003959
1
ENSBTAE00000426893
chr10:
44963483-44963676
194
GBG2_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000003959
2
ENSBTAE00000334135
chr10:
44982173-44982213
41
GBG2_BOVIN
-
0
0
-
-
1.3
ENSBTAT00000003959
3
ENSBTAE00000031865
chr10:
45110571-45110684
114
GBG2_BOVIN
1-29
29
1
G:18-36
19
1.4
ENSBTAT00000003959
4
ENSBTAE00000031866
chr10:
45131763-45132218
456
GBG2_BOVIN
30-71
42
1
G:37-67
31
2.1
ENSBTAT00000045065
1
ENSBTAE00000334067
chr16:
48127959-48128171
213
GBB1_BOVIN
-
0
0
-
-
2.3
ENSBTAT00000045065
3
ENSBTAE00000002006
chr16:
48183972-48184074
103
GBB1_BOVIN
1-19
19
1
B:11-19
9
2.4
ENSBTAT00000045065
4
ENSBTAE00000002007
chr16:
48187973-48188011
39
GBB1_BOVIN
20-32
13
1
B:20-32
13
2.5
ENSBTAT00000045065
5
ENSBTAE00000376692
chr16:
48189546-48189652
107
GBB1_BOVIN
33-68
36
1
B:33-68
36
2.6
ENSBTAT00000045065
6
ENSBTAE00000386769
chr16:
48193508-48193571
64
GBB1_BOVIN
68-89
22
1
B:68-89
22
2.7
ENSBTAT00000045065
7
ENSBTAE00000002010
chr16:
48194640-48194802
163
GBB1_BOVIN
90-144
55
1
B:90-144
55
2.8
ENSBTAT00000045065
8
ENSBTAE00000394803
chr16:
48200709-48200775
67
GBB1_BOVIN
144-166
23
1
B:144-166
23
2.9
ENSBTAT00000045065
9
ENSBTAE00000002012
chr16:
48202132-48202333
202
GBB1_BOVIN
166-233
68
1
B:166-233
68
2.10
ENSBTAT00000045065
10
ENSBTAE00000388531
chr16:
48203047-48203263
217
GBB1_BOVIN
234-306
73
1
B:234-306
73
2.11
ENSBTAT00000045065
11
ENSBTAE00000002014
chr16:
48203934-48204049
116
GBB1_BOVIN
306-340
35
1
B:306-340
35
2.12b
ENSBTAT00000045065
12b
ENSBTAE00000334058
chr16:
48204269-48205916
1648
GBB1_BOVIN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3ah8g_ (G:)
2a: SCOP_d3ah8b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Family
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Protein domain
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d3ah8g_
G:
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
beta1-subunit of the signal-transducing G protein heterotrimer
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
2a
d3ah8b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain G
Chain Y
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (122 KB)
Header - Asym.Unit
Biol.Unit 1 (116 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3AH8
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help