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3AGP
Biol. Unit 2
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Asym.Unit (194 KB)
Biol.Unit 1 (189 KB)
Biol.Unit 2 (374 KB)
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(1)
Title
:
STRUCTURE OF VIRAL POLYMERASE FORM I
Authors
:
D. Takeshita, K. Tomita
Date
:
06 Apr 10 (Deposition) - 01 Sep 10 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Rna Polymerase, Replicase, Translation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Takeshita, K. Tomita
Assembly Of Q{Beta} Viral Rna Polymerase With Host Translational Elongation Factors Ef-Tu And -Ts
Proc. Natl. Acad. Sci. Usa V. 107 15733 2010
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Hetero Components
(0, 0)
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1a: CALCIUM ION (CAa)
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:968 , ASP A:1054 , GLU A:1089 , HOH A:2024
BINDING SITE FOR RESIDUE CA A 2001
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_EFTU_ECO57_001 (S678G, chain A, )
2: VAR_RDRP_BPQBE_001 (I892I, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_EFTU_ECO57_001
*
S
394
G
EFTU_ECO57
---
---
A
S
678
G
2
UniProt
VAR_RDRP_BPQBE_001
*
T
198
I
RDRP_BPQBE
---
---
A
I
892
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 14)
Info
All PROSITE Patterns/Profiles
1: EF_TS_1 (A:12-27)
2: G_TR_1 (A:349-350)
3: EF_TS_2 (A:75-85)
4: RDRP_PHAGE (A:953-1085)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_TS_1
PS01126
Elongation factor Ts signature 1.
EFTS_ECO57
12-27
2
A:12-27
EFTS_ECOLI
12-27
2
A:12-27
2
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFTU2_ECOLI
51-66
2
A:349-350
EFTU_ECO57
51-66
2
A:349-350
3
EF_TS_2
PS01127
Elongation factor Ts signature 2.
EFTS_ECO57
75-85
2
A:75-85
EFTS_ECOLI
75-85
2
A:75-85
4
RDRP_PHAGE
PS50522
RdRp of RNA-containing bacteriophages catalytic domain profile.
RDRP_BPQBE
259-391
2
A:953-1085
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Asym.Unit (194 KB)
Header - Asym.Unit
Biol.Unit 1 (189 KB)
Header - Biol.Unit 1
Biol.Unit 2 (374 KB)
Header - Biol.Unit 2
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