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3AF9
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (767 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PD(ALLYL)/APO-C48AFR
Authors
:
S. Abe, T. Hikage, Y. Watanabe, S. Kitagawa, T. Ueno
Date
:
24 Feb 10 (Deposition) - 11 Aug 10 (Release) - 11 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : X
Biol. Unit 1: X (24x)
Keywords
:
Iron Storage Protein, Light Chain Ferritin, Artificial Metalloprotein, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Abe, T. Hikage, Y. Watanabe, S. Kitagawa, T. Ueno
Mechanism Of Accumulation And Incorporation Of Organometallic Pd Complexes Into The Protein Nanocage Of Apo-Ferritin.
Inorg. Chem. V. 49 6967 2010
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
3a: PALLADIUM ION (PDa)
4a: PALLADIUM(II) ALLYL COMPLEX (PLLa)
5a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CD
3
Ligand/Ion
CADMIUM ION
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
PD
1
Ligand/Ion
PALLADIUM ION
4
PLL
1
Ligand/Ion
PALLADIUM(II) ALLYL COMPLEX
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN X:6 , ASN X:7 , HOH X:223 , HOH X:252 , HOH X:257
BINDING SITE FOR RESIDUE SO4 X 175
02
AC2
SOFTWARE
ASP X:80 , GLN X:82
BINDING SITE FOR RESIDUE CD X 176
03
AC3
SOFTWARE
HIS X:49
BINDING SITE FOR RESIDUE CD X 177
04
AC4
SOFTWARE
ASP X:127 , ASP X:135
BINDING SITE FOR RESIDUE CD X 178
05
AC5
SOFTWARE
HIS X:114 , PRO X:123 , CYS X:126 , GLU X:130 , PD X:180 , HOH X:293
BINDING SITE FOR RESIDUE PLL X 179
06
AC6
SOFTWARE
CYS X:126 , PLL X:179 , HOH X:293
BINDING SITE FOR RESIDUE PD X 180
07
AC7
SOFTWARE
TYR X:36 , GLY X:90 , THR X:91 , ARG X:153 , GLU X:163 , HOH X:309
BINDING SITE FOR RESIDUE EDO X 181
08
AC8
SOFTWARE
THR X:10 , GLU X:11 , ALA X:14 , HOH X:218
BINDING SITE FOR RESIDUE EDO X 182
09
AC9
SOFTWARE
SER X:27
BINDING SITE FOR RESIDUE EDO X 183
10
BC1
SOFTWARE
ARG X:5 , TYR X:8 , THR X:10 , HOH X:223
BINDING SITE FOR RESIDUE EDO X 184
11
BC2
SOFTWARE
ILE X:151 , LEU X:154 , VAL X:155 , ALA X:159 , GLY X:162 , GLU X:163 , HOH X:255 , HOH X:277
BINDING SITE FOR RESIDUE EDO X 185
12
BC3
SOFTWARE
ARG X:25 , LYS X:83 , SER X:85
BINDING SITE FOR RESIDUE EDO X 186
13
BC4
SOFTWARE
LEU X:93 , GLN X:152 , VAL X:155 , HOH X:269
BINDING SITE FOR RESIDUE EDO X 187
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (X:6-155)
2: FERRITIN_1 (X:57-75)
3: FERRITIN_2 (X:122-142)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIL_HORSE
7-156
1
X:6-155
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIL_HORSE
58-76
1
X:57-75
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIL_HORSE
123-143
1
X:122-142
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3af9x_ (X:)
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Protein Domains
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Horse (Equus caballus), L chain [TaxId: 9796]
(46)
1a
d3af9x_
X:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain X
Asymmetric Unit 1
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