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3AC0
Asym. Unit
Info
Asym.Unit (559 KB)
Biol.Unit 1 (553 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM KLUYVEROMYCES MARXIANUS IN COMPLEX WITH GLUCOSE
Authors
:
E. Yoshida, M. Hidaka, S. Fushinobu, T. Katayama, H. Kumagai
Date
:
25 Dec 09 (Deposition) - 11 Aug 10 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Glycoside Hydrolase Family3 Beta-Glucosidase, Pa14 Domain, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Yoshida, M. Hidaka, S. Fushinobu, T. Koyanagi, H. Minami, H. Tamaki M. Kitaoka, T. Katayama, H. Kumagai
Role Of A Pa14 Domain In Determining Substrate Specificity Of A Glycoside Hydrolase Family 3 Beta-Glucosidase From Kluyveromyces Marxianus.
Biochem. J. V. 431 39 2010
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
View:
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No.
Name
Count
Type
Full Name
1
BGC
4
Ligand/Ion
BETA-D-GLUCOSE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:28 , ASP A:45 , LEU A:99 , ARG A:113 , LYS A:146 , HIS A:147 , MET A:190 , TYR A:193 , ASP A:225 , TRP A:226 , SER A:356 , GLU A:590
BINDING SITE FOR RESIDUE BGC A 5001
2
AC2
SOFTWARE
ASP B:45 , LEU B:99 , ARG B:113 , LYS B:146 , HIS B:147 , TYR B:193 , ASP B:225 , TRP B:226 , SER B:356 , GLU B:590
BINDING SITE FOR RESIDUE BGC B 5002
3
AC3
SOFTWARE
TRP C:28 , ASP C:45 , LEU C:99 , ARG C:113 , LYS C:146 , HIS C:147 , MET C:190 , TYR C:193 , ASP C:225 , TRP C:226 , SER C:356 , GLU C:590
BINDING SITE FOR RESIDUE BGC C 5003
4
AC4
SOFTWARE
TRP D:28 , ASP D:45 , LEU D:99 , ARG D:113 , LYS D:146 , HIS D:147 , MET D:190 , TYR D:193 , ASP D:225 , TRP D:226 , GLU D:590
BINDING SITE FOR RESIDUE BGC D 5004
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 16)
Info
All SCOP Domains
1a: SCOP_d3ac0a3 (A:388-559)
1b: SCOP_d3ac0b3 (B:388-559)
1c: SCOP_d3ac0c3 (C:388-559)
1d: SCOP_d3ac0d3 (D:388-559)
2a: SCOP_d3ac0a4 (A:721-845)
2b: SCOP_d3ac0b4 (B:721-845)
2c: SCOP_d3ac0c4 (C:721-845)
2d: SCOP_d3ac0d4 (D:721-845)
3a: SCOP_d3ac0a2 (A:300-387,A:560-720)
3b: SCOP_d3ac0b2 (B:300-387,B:560-720)
3c: SCOP_d3ac0c2 (C:300-387,C:560-720)
3d: SCOP_d3ac0d2 (D:300-387,D:560-720)
4a: SCOP_d3ac0a1 (A:2-299)
4b: SCOP_d3ac0b1 (B:3-299)
4c: SCOP_d3ac0c1 (C:3-299)
4d: SCOP_d3ac0d1 (D:3-299)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Anthrax protective antigen N-terminal-like
(32)
Superfamily
:
PA14-like
(32)
Family
:
PA14
(16)
Protein domain
:
Beta-glucosidase PA14 domain
(2)
Kluyveromyces marxianus [TaxId: 4911]
(2)
1a
d3ac0a3
A:388-559
1b
d3ac0b3
B:388-559
1c
d3ac0c3
C:388-559
1d
d3ac0d3
D:388-559
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin III-like
(5)
Family
:
Fibronectin III-like
(3)
Protein domain
:
Beta-glucosidase C-terminal domain
(3)
Kluyveromyces marxianus [TaxId: 4911]
(2)
2a
d3ac0a4
A:721-845
2b
d3ac0b4
B:721-845
2c
d3ac0c4
C:721-845
2d
d3ac0d4
D:721-845
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Beta-D-glucan exohydrolase, C-terminal domain-like
(14)
Family
:
Beta-D-glucan exohydrolase, C-terminal domain-like
(14)
Protein domain
:
Beta-glucosidase middle domain
(3)
Kluyveromyces marxianus [TaxId: 4911]
(2)
3a
d3ac0a2
A:300-387,A:560-720
3b
d3ac0b2
B:300-387,B:560-720
3c
d3ac0c2
C:300-387,C:560-720
3d
d3ac0d2
D:300-387,D:560-720
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
NagZ-like
(19)
Protein domain
:
Beta-glucosidase
(3)
Kluyveromyces marxianus [TaxId: 4911]
(2)
4a
d3ac0a1
A:2-299
4b
d3ac0b1
B:3-299
4c
d3ac0c1
C:3-299
4d
d3ac0d1
D:3-299
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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