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3ABG
Asym. Unit
Info
Asym.Unit (184 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
X-RAY CRYSTAL ANALYSIS OF BILIRUBIN OXIDASE FROM MYROTHECIUM VERRUCARIA AT 2.3 ANGSTROM RESOLUTION USING A TWIN CRYSTAL
Authors
:
K. Mizutani, M. Toyoda, K. Sagara, N. Takahashi, A. Sato, Y. Kamitaka, S. Tsujimura, Y. Nakanishi, T. Sugiura, S. Yamaguchi, K. Kano, B. Mika
Date
:
10 Dec 09 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Bilirubin Oxidase, Cleavage On Pair Of Basic Residues, Glycoprotein, Metal-Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Mizutani, M. Toyoda, K. Sagara, N. Takahashi, A. Sato, Y. Kamitaka, S. Tsujimura, Y. Nakanishi, T. Sugiura, S. Yamaguchi, K. Kano, B. Mikami
X-Ray Analysis Of Bilirubin Oxidase From Myrothecium Verrucaria At 2. 3 A Resolution Using A Twinned Crystal
Acta Crystallogr. , Sect. F V. 66 765 2010
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CU
8
Ligand/Ion
COPPER (II) ION
3
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:452 , ASN A:472 , THR A:474 , VAL A:475 , HOH A:544 , HOH A:571 , NAG A:602
BINDING SITE FOR RESIDUE NAG A 601
02
AC2
SOFTWARE
THR A:484 , NAG A:601 , BMA A:603
BINDING SITE FOR RESIDUE NAG A 602
03
AC3
SOFTWARE
NAG A:602
BINDING SITE FOR RESIDUE BMA A 603
04
AC4
SOFTWARE
ASN A:482 , GLN A:495 , NAG A:612
BINDING SITE FOR RESIDUE NDG A 611
05
AC5
SOFTWARE
NDG A:611
BINDING SITE FOR RESIDUE NAG A 612
06
AC6
SOFTWARE
HIS A:136 , HIS A:403 , HIS A:456 , HOH A:662
BINDING SITE FOR RESIDUE CU A 701
07
AC7
SOFTWARE
HIS A:96 , TRP A:132 , HIS A:134 , HIS A:458 , HOH A:662
BINDING SITE FOR RESIDUE CU A 702
08
AC8
SOFTWARE
HIS A:94 , HIS A:96 , HIS A:401 , HIS A:403 , HOH A:563
BINDING SITE FOR RESIDUE CU A 703
09
AC9
SOFTWARE
THR A:397 , HIS A:398 , CYS A:457 , HIS A:462 , MET A:467
BINDING SITE FOR RESIDUE CU A 704
10
BC1
SOFTWARE
ASN B:472 , THR B:474 , VAL B:475 , NAG B:602
BINDING SITE FOR RESIDUE NAG B 601
11
BC2
SOFTWARE
ALA B:483 , THR B:484 , NAG B:601 , BMA B:603
BINDING SITE FOR RESIDUE NAG B 602
12
BC3
SOFTWARE
HOH B:568 , NAG B:602 , HOH B:674
BINDING SITE FOR RESIDUE BMA B 603
13
BC4
SOFTWARE
ASN B:482 , GLN B:495 , ALA B:496 , NAG B:612
BINDING SITE FOR RESIDUE NAG B 611
14
BC5
SOFTWARE
NAG B:611
BINDING SITE FOR RESIDUE NAG B 612
15
BC6
SOFTWARE
HIS B:136 , HIS B:403 , HIS B:456 , HOH B:713
BINDING SITE FOR RESIDUE CU B 701
16
BC7
SOFTWARE
HIS B:96 , TRP B:132 , HIS B:134 , HIS B:458 , HOH B:713
BINDING SITE FOR RESIDUE CU B 702
17
BC8
SOFTWARE
HIS B:94 , HIS B:96 , HIS B:401 , HIS B:403
BINDING SITE FOR RESIDUE CU B 703
18
BC9
SOFTWARE
HIS B:398 , CYS B:457 , HIS B:462 , MET B:467
BINDING SITE FOR RESIDUE CU B 704
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (184 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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