PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3AA7
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (90 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN
Authors
:
S. Takeda, S. Minakata, A. Narita, M. Kitazawa, T. Yamakuni, Y. Maeda, Y
Date
:
11 Nov 09 (Deposition) - 04 Aug 10 (Release) - 04 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Actin Capping Protein, Barbed End Regulation, Carmil Family Protein, Conformational Change, Cell Motility, Actin Capping, Actin-Binding, Cytoskeleton, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Takeda, S. Minakata, R. Koike, I. Kawahata, A. Narita, M. Kitazawa, M. Ota, T. Yamakuni, Y. Maeda, Y. Nitanai
Two Distinct Mechanisms For Actin Capping Protein Regulation--Steric And Allosteric Inhibition
Plos Biol. V. 8 E1000 2010
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: BARIUM ION (BAa)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BA
1
Ligand/Ion
BARIUM ION
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:41 , TYR B:64 , HOH B:392 , HOH B:439 , HOH B:441
BINDING SITE FOR RESIDUE BA B 245
2
AC2
SOFTWARE
ASN A:42 , ASP A:81 , GLY A:83 , ARG B:51 , LYS B:53 , VAL B:54 , GLY B:56
BINDING SITE FOR RESIDUE MES B 246
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CAZA1_CHICK_001 (F163I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CAZA1_CHICK_001
*
F
163
I
CAZA1_CHICK
---
---
A
F
163
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: F_ACTIN_CAPPING_BETA (B:62-67)
2: F_ACTIN_CAPPING_A_1 (A:196-204)
3: F_ACTIN_CAPPING_A_2 (A:256-266)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
F_ACTIN_CAPPING_BETA
PS00231
F-actin capping protein beta subunit signature.
CAPZB_CHICK
62-67
1
B:62-67
2
F_ACTIN_CAPPING_A_1
PS00748
F-actin capping protein alpha subunit signature 1.
CAZA1_CHICK
196-204
1
A:196-204
3
F_ACTIN_CAPPING_A_2
PS00749
F-actin capping protein alpha subunit signature 2.
CAZA1_CHICK
256-266
1
A:256-266
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.2a (B:2-30)
Exon 1.3 (B:31-71)
Exon 1.4 (B:71-109)
Exon 1.5 (B:109-156)
Exon 1.6 (B:157-195)
Exon 1.7 (B:196-217)
Exon 1.8 (B:218-243)
Exon 1.9 (B:243-244)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/1.10a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENSGALT00000006425
2a
ENSGALE00000042043
chr21:
4747591-4747501
91
CAPZB_CHICK
1-30
30
1
B:2-30
29
1.3
ENSGALT00000006425
3
ENSGALE00000042051
chr21:
4734482-4734361
122
CAPZB_CHICK
31-71
41
1
B:31-71
41
1.4
ENSGALT00000006425
4
ENSGALE00000042045
chr21:
4723866-4723753
114
CAPZB_CHICK
71-109
39
1
B:71-109
39
1.5
ENSGALT00000006425
5
ENSGALE00000042044
chr21:
4709816-4709675
142
CAPZB_CHICK
109-156
48
1
B:109-156
48
1.6
ENSGALT00000006425
6
ENSGALE00000042049
chr21:
4709146-4709030
117
CAPZB_CHICK
157-195
39
1
B:157-195
39
1.7
ENSGALT00000006425
7
ENSGALE00000042042
chr21:
4702101-4702036
66
CAPZB_CHICK
196-217
22
1
B:196-217
22
1.8
ENSGALT00000006425
8
ENSGALE00000042048
chr21:
4701227-4701151
77
CAPZB_CHICK
218-243
26
1
B:218-243
26
1.9
ENSGALT00000006425
9
ENSGALE00000042047
chr21:
4699862-4699750
113
CAPZB_CHICK
243-276
34
1
B:243-244
2
1.10a
ENSGALT00000006425
10a
ENSGALE00000042050
chr21:
4697971-4697725
247
CAPZB_CHICK
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3aa7a_ (A:)
2a: SCOP_d3aa7b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Subunits of heterodimeric actin filament capping protein Capz
(18)
Superfamily
:
Subunits of heterodimeric actin filament capping protein Capz
(18)
Family
:
Capz alpha-1 subunit
(10)
Protein domain
:
Capz alpha-1 subunit
(10)
Chicken (Gallus gallus) [TaxId: 9031]
(10)
1a
d3aa7a_
A:
Family
:
Capz beta-1 subunit
(7)
Protein domain
:
Capz beta-1 subunit
(6)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
2a
d3aa7b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (95 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3AA7
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help