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3AA0
Asym. Unit
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Asym.Unit (103 KB)
Biol.Unit 1 (99 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN IN COMPLEX WITH THE CP-BINDING MOTIF DERIVED FROM CARMIL
Authors
:
S. Takeda, S. Minakata, A. Narita, M. Kitazawa, T. Yamakuni, Y. Maeda, Y
Date
:
11 Nov 09 (Deposition) - 04 Aug 10 (Release) - 04 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Actin Capping Protein, Barbed End Regulation, Carmil Family Protein, Conformational Change, Cell Motility, Actin Capping, Actin-Binding, Cytoskeleton, Isopeptide Bond, Leucine-Rich Repeat, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Takeda, S. Minakata, R. Koike, I. Kawahata, A. Narita, M. Kitazawa, M. Ota, T. Yamakuni, Y. Maeda, Y. Nitanai
Two Distinct Mechanisms For Actin Capping Protein Regulation--Steric And Allosteric Inhibition
Plos Biol. V. 8 E1000 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO3
1
Ligand/Ion
CARBONATE ION
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:168 , TYR A:199 , GLU A:200 , ASP A:201 , HOH A:397 , ARG B:14 , GLU C:987
BINDING SITE FOR RESIDUE CO3 B 245
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CAZA1_CHICK_001 (F163I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CAZA1_CHICK_001
*
F
163
I
CAZA1_CHICK
---
---
A
F
163
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: F_ACTIN_CAPPING_BETA (B:62-67)
2: F_ACTIN_CAPPING_A_1 (A:196-204)
3: F_ACTIN_CAPPING_A_2 (A:256-266)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
F_ACTIN_CAPPING_BETA
PS00231
F-actin capping protein beta subunit signature.
CAPZB_CHICK
62-67
1
B:62-67
2
F_ACTIN_CAPPING_A_1
PS00748
F-actin capping protein alpha subunit signature 1.
CAZA1_CHICK
196-204
1
A:196-204
3
F_ACTIN_CAPPING_A_2
PS00749
F-actin capping protein alpha subunit signature 2.
CAZA1_CHICK
256-266
1
A:256-266
[
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]
Exons
(9, 9)
Info
All Exons
Exon 1.2a (B:2-30)
Exon 1.3 (B:31-71)
Exon 1.4 (B:71-109)
Exon 1.5 (B:109-156)
Exon 1.6 (B:157-195)
Exon 1.7 (B:196-217)
Exon 1.8 (B:218-243)
Exon 1.9 (B:243-244)
Exon 2.41 (C:985-1003)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2a
02: Boundary 1.2a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10a
10: Boundary 2.40/2.41
11: Boundary 2.41/2.42
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENSGALT00000006425
2a
ENSGALE00000042043
chr21:
4747591-4747501
91
CAPZB_CHICK
1-30
30
1
B:2-30
29
1.3
ENSGALT00000006425
3
ENSGALE00000042051
chr21:
4734482-4734361
122
CAPZB_CHICK
31-71
41
1
B:31-71
41
1.4
ENSGALT00000006425
4
ENSGALE00000042045
chr21:
4723866-4723753
114
CAPZB_CHICK
71-109
39
1
B:71-109
39
1.5
ENSGALT00000006425
5
ENSGALE00000042044
chr21:
4709816-4709675
142
CAPZB_CHICK
109-156
48
1
B:109-156
48
1.6
ENSGALT00000006425
6
ENSGALE00000042049
chr21:
4709146-4709030
117
CAPZB_CHICK
157-195
39
1
B:157-195
39
1.7
ENSGALT00000006425
7
ENSGALE00000042042
chr21:
4702101-4702036
66
CAPZB_CHICK
196-217
22
1
B:196-217
22
1.8
ENSGALT00000006425
8
ENSGALE00000042048
chr21:
4701227-4701151
77
CAPZB_CHICK
218-243
26
1
B:218-243
26
1.9
ENSGALT00000006425
9
ENSGALE00000042047
chr21:
4699862-4699750
113
CAPZB_CHICK
243-276
34
1
B:243-244
2
1.10a
ENSGALT00000006425
10a
ENSGALE00000042050
chr21:
4697971-4697725
247
CAPZB_CHICK
-
0
0
-
-
2.1a
ENSMUST00000072889
1a
ENSMUSE00000912403
chr13:
24372664-24372430
235
CARL1_MOUSE
1-14
14
0
-
-
2.3
ENSMUST00000072889
3
ENSMUSE00000413275
chr13:
24368423-24368326
98
CARL1_MOUSE
14-46
33
0
-
-
2.6
ENSMUST00000072889
6
ENSMUSE00000370559
chr13:
24270126-24270076
51
CARL1_MOUSE
47-63
17
0
-
-
2.7b
ENSMUST00000072889
7b
ENSMUSE00000413785
chr13:
24265544-24265485
60
CARL1_MOUSE
64-83
20
0
-
-
2.8b
ENSMUST00000072889
8b
ENSMUSE00000337149
chr13:
24256791-24256670
122
CARL1_MOUSE
84-124
41
0
-
-
2.9b
ENSMUST00000072889
9b
ENSMUSE00000380434
chr13:
24247356-24247259
98
CARL1_MOUSE
124-157
34
0
-
-
2.11
ENSMUST00000072889
11
ENSMUSE00000399014
chr13:
24246923-24246853
71
CARL1_MOUSE
157-180
24
0
-
-
2.12
ENSMUST00000072889
12
ENSMUSE00000355440
chr13:
24246620-24246547
74
CARL1_MOUSE
181-205
25
0
-
-
2.13
ENSMUST00000072889
13
ENSMUSE00000571498
chr13:
24233600-24233525
76
CARL1_MOUSE
205-230
26
0
-
-
2.14a
ENSMUST00000072889
14a
ENSMUSE00000571497
chr13:
24231246-24231158
89
CARL1_MOUSE
231-260
30
0
-
-
2.15
ENSMUST00000072889
15
ENSMUSE00000571496
chr13:
24229100-24229006
95
CARL1_MOUSE
260-292
33
0
-
-
2.16
ENSMUST00000072889
16
ENSMUSE00000571495
chr13:
24213794-24213708
87
CARL1_MOUSE
292-321
30
0
-
-
2.17
ENSMUST00000072889
17
ENSMUSE00000571494
chr13:
24207447-24207344
104
CARL1_MOUSE
321-355
35
0
-
-
2.19
ENSMUST00000072889
19
ENSMUSE00000571493
chr13:
24203960-24203883
78
CARL1_MOUSE
356-381
26
0
-
-
2.20
ENSMUST00000072889
20
ENSMUSE00000571492
chr13:
24203755-24203679
77
CARL1_MOUSE
382-407
26
0
-
-
2.21b
ENSMUST00000072889
21b
ENSMUSE00000862598
chr13:
24200463-24200359
105
CARL1_MOUSE
407-442
36
0
-
-
2.22
ENSMUST00000072889
22
ENSMUSE00000617391
chr13:
24198247-24198178
70
CARL1_MOUSE
442-465
24
0
-
-
2.23
ENSMUST00000072889
23
ENSMUSE00000683869
chr13:
24193952-24193941
12
CARL1_MOUSE
466-469
4
0
-
-
2.26a
ENSMUST00000072889
26a
ENSMUSE00000896395
chr13:
24191532-24191451
82
CARL1_MOUSE
470-497
28
0
-
-
2.27
ENSMUST00000072889
27
ENSMUSE00000617388
chr13:
24190929-24190830
100
CARL1_MOUSE
497-530
34
0
-
-
2.28
ENSMUST00000072889
28
ENSMUSE00000643068
chr13:
24190729-24190675
55
CARL1_MOUSE
530-548
19
0
-
-
2.29a
ENSMUST00000072889
29a
ENSMUSE00000643067
chr13:
24186439-24186267
173
CARL1_MOUSE
549-606
58
0
-
-
2.30
ENSMUST00000072889
30
ENSMUSE00000643065
chr13:
24184443-24184375
69
CARL1_MOUSE
606-629
24
0
-
-
2.31
ENSMUST00000072889
31
ENSMUSE00000643062
chr13:
24180940-24180847
94
CARL1_MOUSE
629-660
32
0
-
-
2.32
ENSMUST00000072889
32
ENSMUSE00000643060
chr13:
24173896-24173798
99
CARL1_MOUSE
661-693
33
0
-
-
2.33
ENSMUST00000072889
33
ENSMUSE00000643058
chr13:
24167609-24167481
129
CARL1_MOUSE
694-736
43
0
-
-
2.34
ENSMUST00000072889
34
ENSMUSE00000643057
chr13:
24165940-24165809
132
CARL1_MOUSE
737-780
44
0
-
-
2.35
ENSMUST00000072889
35
ENSMUSE00000643055
chr13:
24161675-24161500
176
CARL1_MOUSE
781-839
59
0
-
-
2.36
ENSMUST00000072889
36
ENSMUSE00000643053
chr13:
24159088-24159001
88
CARL1_MOUSE
839-868
30
0
-
-
2.37a
ENSMUST00000072889
37a
ENSMUSE00000643052
chr13:
24156595-24156446
150
CARL1_MOUSE
869-918
50
0
-
-
2.40
ENSMUST00000072889
40
ENSMUSE00000643049
chr13:
24136951-24136885
67
CARL1_MOUSE
919-941
23
0
-
-
2.41
ENSMUST00000072889
41
ENSMUSE00000643046
chr13:
24136239-24136043
197
CARL1_MOUSE
941-1006
66
1
C:985-1003
19
2.42
ENSMUST00000072889
42
ENSMUSE00000643045
chr13:
24133654-24133542
113
CARL1_MOUSE
1007-1044
38
0
-
-
2.43b
ENSMUST00000072889
43b
ENSMUSE00000643044
chr13:
24128477-24128054
424
CARL1_MOUSE
1044-1185
142
0
-
-
2.44
ENSMUST00000072889
44
ENSMUSE00000643043
chr13:
24117804-24117723
82
CARL1_MOUSE
1186-1213
28
0
-
-
2.45
ENSMUST00000072889
45
ENSMUSE00000643042
chr13:
24116404-24116192
213
CARL1_MOUSE
1213-1284
72
0
-
-
2.46a
ENSMUST00000072889
46a
ENSMUSE00000643041
chr13:
24114505-24114365
141
CARL1_MOUSE
1284-1331
48
0
-
-
2.49c
ENSMUST00000072889
49c
ENSMUSE00000478715
chr13:
24105329-24104528
802
CARL1_MOUSE
1331-1374
44
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3aa0a_ (A:)
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Subunits of heterodimeric actin filament capping protein Capz
(18)
Superfamily
:
Subunits of heterodimeric actin filament capping protein Capz
(18)
Family
:
Capz alpha-1 subunit
(10)
Protein domain
:
Capz alpha-1 subunit
(10)
Chicken (Gallus gallus) [TaxId: 9031]
(10)
1a
d3aa0a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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