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3A9J
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MOUSE TAB2-NZF IN COMPLEX WITH LYS63-LINKED DI-UBIQUITIN
Authors
:
Y. Sato, A. Yoshikawa, M. Yamashita, A. Yamagata, S. Fukai
Date
:
29 Oct 09 (Deposition) - 08 Dec 09 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.18
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Protein Complex, Cytoplasm, Isopeptide Bond, Metal-Binding, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Sato, A. Yoshikawa, M. Yamashita, A. Yamagata, S. Fukai
Structural Basis For Specific Recognition Of Lys 63-Linked Polyubiquitin Chains By Nzf Domains Of Tab2 And Tab3
Embo J. V. 28 3903 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:670 , CYS C:673 , CYS C:684 , CYS C:687
BINDING SITE FOR RESIDUE ZN C 1
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 6)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-76,B:1-76,-|-|-|-|-|-|-|-|A:1-...)
2: UBIQUITIN_1 (A:27-52,B:27-52,-|-|-|-|-|-|-|-|A:...)
3: ZF_RANBP2_2 (C:666-693)
4: ZF_RANBP2_1 (C:668-687)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RL40_MOUSE
1-76
2
A:1-76
B:1-76
UBC_MOUSE
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
2
-
-
-
-
-
-
-
-
A:1-76
B:1-76
RS27A_MOUSE
1-76
2
A:1-76
B:1-76
UBB_MOUSE
1-76
77-152
153-228
229-304
2
-
-
A:1-76
B:1-76
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RL40_MOUSE
27-52
2
A:27-52
B:27-52
UBC_MOUSE
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
2
-
-
-
-
-
-
-
-
A:27-52
B:27-52
RS27A_MOUSE
27-52
2
A:27-52
B:27-52
UBB_MOUSE
27-52
103-128
179-204
255-280
2
-
-
A:27-52
B:27-52
3
ZF_RANBP2_2
PS50199
Zinc finger RanBP2 type profile.
TAB2_MOUSE
663-693
1
C:666-693
4
ZF_RANBP2_1
PS01358
Zinc finger RanBP2-type signature.
TAB2_MOUSE
668-687
1
C:668-687
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3a9ja_ (A:)
1b: SCOP_d3a9jb_ (B:)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d3a9ja_
A:
1b
d3a9jb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3a9jB00 (B:1-77)
1b: CATH_3a9jA00 (A:1-76)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Mouse (Mus musculus)
(10)
1a
3a9jB00
B:1-77
1b
3a9jA00
A:1-76
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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