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3A9E
Asym. Unit
Info
Asym.Unit (170 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (326 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A MIXED AGONIST-BOUND RAR-ALPHA AND ANTAGONIST-BOUND RXR-ALPHA HETERODIMER LIGAND BINDING DOMAINS
Authors
:
Y. Sato, S. Duclaud, C. Peluso-Iltis, P. Poussin, D. Moras, N. Rochel
Date
:
24 Oct 09 (Deposition) - 06 Oct 10 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,I
Biol. Unit 1: A,B,I (1x)
Biol. Unit 2: A,B,I (2x)
Keywords
:
Transcription, Nucleus, Receptor, Transcription Regulation, Structural Genomics, Spine2-Complexes, Structural Proteomics In Europe
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Sato, N. Ramalanjaona, T. Huet, N. Potier, J. Osz, P. Antony, C. Peluso-Iltis, P. Poussin-Courmontagne, E. Ennifar, Y. Mely, A. Dejaegere, D. Moras, N. Rochel
The Phantom Effect Of The Rexinoid Lg100754: Structural And Functional Insights
Plos One V. 5 15119 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: (2E,4E,6Z)-3-METHYL-7-(5,5,8,8-TET... (754a)
2a: RETINOIC ACID (REAa)
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Label:
No.
Name
Count
Type
Full Name
1
754
1
Ligand/Ion
(2E,4E,6Z)-3-METHYL-7-(5,5,8,8-TETRAMETHYL-3-PROPOXY-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)OCTA-2,4,6-TRIENOICACID
2
REA
1
Ligand/Ion
RETINOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:273 , ALA A:276 , GLN A:280 , TRP A:310 , PHE A:318 , ARG A:321 , LEU A:331 , ALA A:332 , ILE A:350 , CYS A:437 , LEU A:441
BINDING SITE FOR RESIDUE 754 A 1
2
AC2
SOFTWARE
HOH B:40 , PHE B:228 , CYS B:235 , LEU B:269 , ARG B:276 , PHE B:286 , SER B:287 , VAL B:395 , LEU B:398
BINDING SITE FOR RESIDUE REA B 1
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(5, 5)
Info
All Exons
Exon 1.10b (B:177-210)
Exon 1.12b (B:211-269)
Exon 1.13b (B:270-338)
Exon 1.14 (B:338-391)
Exon 1.15d (B:391-415)
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All Exon Boundaries
1: Boundary 1.8/1.10b
2: Boundary 1.10b/1.12b
3: Boundary 1.12b/1.13b
4: Boundary 1.13b/1.14
5: Boundary 1.14/1.15d
6: Boundary 1.15d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000394089
2
ENSE00001517476
chr17:
38474497-38474700
204
RARA_HUMAN
-
0
0
-
-
1.3
ENST00000394089
3
ENSE00001422265
chr17:
38487109-38487648
540
RARA_HUMAN
1-60
60
0
-
-
1.7
ENST00000394089
7
ENSE00001594260
chr17:
38504568-38504716
149
RARA_HUMAN
60-109
50
0
-
-
1.8
ENST00000394089
8
ENSE00001760241
chr17:
38506036-38506177
142
RARA_HUMAN
110-157
48
0
-
-
1.10b
ENST00000394089
10b
ENSE00000900551
chr17:
38508162-38508322
161
RARA_HUMAN
157-210
54
1
B:177-210
34
1.12b
ENST00000394089
12b
ENSE00000900554
chr17:
38508583-38508759
177
RARA_HUMAN
211-269
59
1
B:211-269
59
1.13b
ENST00000394089
13b
ENSE00001735102
chr17:
38510554-38510758
205
RARA_HUMAN
270-338
69
1
B:270-338
69
1.14
ENST00000394089
14
ENSE00000900558
chr17:
38511515-38511673
159
RARA_HUMAN
338-391
54
1
B:338-391
54
1.15d
ENST00000394089
15d
ENSE00001374856
chr17:
38512261-38513894
1634
RARA_HUMAN
391-462
72
1
B:391-415
25
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3a9ea_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Retinoid-X receptor alpha (RXR-alpha)
(36)
Mouse (Mus musculus) [TaxId: 10090]
(3)
1a
d3a9ea_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (170 KB)
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