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3A8Y
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE BAG5 BD5 AND HSP70 NBD
Authors
:
A. Arakawa, N. Handa, N. Ohsawa, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
13 Oct 09 (Deposition) - 31 Mar 10 (Release) - 31 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Bag Domain, Hsp70, Atpase Domain, Protein Complex, Triple Helix, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Arakawa, N. Handa, N. Ohsawa, M. Shida, T. Kigawa, F. Hayashi, M. Shirouzu, S. Yokoyama
The C-Terminal Bag Domain Of Bag5 Induces Conformational Changes Of The Hsp70 Nucleotide-Binding Domain For Adp-Atp Exchange
Structure V. 18 309 2010
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
1b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:10 , TYR A:15 , GLU A:175 , ASP A:199 , GLY A:338 , VAL A:369 , HOH A:390
BINDING SITE FOR RESIDUE TRS A 7359
2
AC2
SOFTWARE
ASP B:10 , GLY B:12 , GLU B:175 , ASP B:199 , GLY B:338 , VAL B:369 , HOH B:504
BINDING SITE FOR RESIDUE TRS B 7360
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_032152 (I95V, chain A/B, )
2: VAR_029053 (E110D, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032152
I
95
V
HS71B_HUMAN
Polymorphism
---
A/B
I
95
V
2
UniProt
VAR_029053
E
110
D
HS71A_HUMAN
Polymorphism
562047
A/B
E
110
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: BAG (-|-|-|C:365-442,D:365-442)
2: HSP70_1 (A:9-16,B:9-16,A:9-16,B:9-16)
3: HSP70_2 (A:197-210,B:197-210,A:197-210,B:19...)
4: HSP70_3 (A:334-348,B:334-348,A:334-348,B:33...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BAG
PS51035
BAG domain profile.
BAG5_HUMAN
9-86
182-260
275-350
365-442
2
-
-
-
C:365-442
D:365-442
2
HSP70_1
PS00297
Heat shock hsp70 proteins family signature 1.
HS71B_HUMAN
9-16
2
A:9-16
B:9-16
HS71A_HUMAN
9-16
2
A:9-16
B:9-16
3
HSP70_2
PS00329
Heat shock hsp70 proteins family signature 2.
HS71B_HUMAN
197-210
2
A:197-210
B:197-210
HS71A_HUMAN
197-210
2
A:197-210
B:197-210
4
HSP70_3
PS01036
Heat shock hsp70 proteins family signature 3.
HS71B_HUMAN
334-348
2
A:334-348
B:334-348
HS71A_HUMAN
334-348
2
A:334-348
B:334-348
[
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Exons
(2, 4)
Info
All Exons
Exon 1.3 (C:349-447 | D:348-447)
Exon 2.3a (A:1-383 | B:4-381 (gaps))
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All Exon Boundaries
1: Boundary 1.1/1.3
2: Boundary 1.3/-
3: Boundary -/2.3a
4: Boundary 2.3a/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000299204
1
ENSE00001426123
chr14:
104029151-104028953
199
BAG5_HUMAN
-
0
0
-
-
1.3
ENST00000299204
3
ENSE00001801194
chr14:
104027529-104022889
4641
BAG5_HUMAN
1-457
457
2
C:349-447
D:348-447
99
100
2.3a
ENST00000391555
3a
ENSE00001509335
HSCHR6_MHC_QBL:31785766-31788290
2525
HS71B_HUMAN
1-713
713
2
A:1-383
B:4-381 (gaps)
383
378
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(4, 10)
Info
all CATH domains
1a: CATH_3a8yA02 (A:68-122)
1b: CATH_3a8yB02 (B:68-122)
2a: CATH_3a8yB01 (B:4-67,B:123-187,B:361-381)
2b: CATH_3a8yA03 (A:188-229,A:313-360)
2c: CATH_3a8yB03 (B:188-229,B:313-360)
2d: CATH_3a8yA01 (A:-1-67,A:123-187,A:361-381)
3a: CATH_3a8yA04 (A:230-312)
3b: CATH_3a8yB04 (B:230-312)
4a: CATH_3a8yD00 (D:348-447)
4b: CATH_3a8yC00 (C:349-447)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Defensin A-like
(149)
Homologous Superfamily
:
[code=3.30.30.30, no name defined]
(60)
Human (Homo sapiens)
(15)
1a
3a8yA02
A:68-122
1b
3a8yB02
B:68-122
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Human (Homo sapiens)
(36)
2a
3a8yB01
B:4-67,B:123-187,B:361-381
2b
3a8yA03
A:188-229,A:313-360
2c
3a8yB03
B:188-229,B:313-360
2d
3a8yA01
A:-1-67,A:123-187,A:361-381
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Human (Homo sapiens)
(29)
3a
3a8yA04
A:230-312
3b
3a8yB04
B:230-312
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Methane Monooxygenase Hydroxylase; Chain G, domain 1
(192)
Homologous Superfamily
:
[code=1.20.58.120, no name defined]
(13)
Human (Homo sapiens)
(8)
4a
3a8yD00
D:348-447
4b
3a8yC00
C:349-447
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (168 KB)
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