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3A8W
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (113 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PKCIOTA KINASE DOMAIN
Authors
:
T. Takimura, K. Kamata
Date
:
11 Oct 09 (Deposition) - 05 May 10 (Release) - 04 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Protein Kinase C Iota, Kinase Domain, Atp Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Takimura, K. Kamata, K. Fukasawa, H. Ohsawa, H. Komatani, T. Yoshizumi, I. Takahashi, H. Kotani, Y. Iwasawa
Structures Of The Pkc-Iota Kinase Domain In Its Atp-Bound And Apo Forms Reveal Defined Structures Of Residues 533-551 In The C-Terminal Tail And Their Roles In Atp Binding
Acta Crystallogr. , Sect. D V. 66 577 2010
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: SULFATE ION (SO4a)
3a: PHOSPHOTHREONINE (TPOa)
3b: PHOSPHOTHREONINE (TPOb)
3c: PHOSPHOTHREONINE (TPOc)
3d: PHOSPHOTHREONINE (TPOd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
SO4
1
Ligand/Ion
SULFATE ION
3
TPO
4
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:251 , GLY A:252 , GLY A:254 , SER A:255 , TYR A:256 , ALA A:257 , VAL A:259 , LYS A:274 , ILE A:323 , GLU A:324 , VAL A:326 , ASP A:387 , PHE A:543 , HOH A:706 , HOH A:714 , HOH A:732 , HOH A:736 , HOH A:738 , HOH A:742 , HOH A:794 , HOH A:804 , HOH A:847
BINDING SITE FOR RESIDUE ATP A 601
2
AC2
SOFTWARE
ILE B:251 , GLY B:252 , ARG B:253 , GLY B:254 , SER B:255 , TYR B:256 , ALA B:257 , VAL B:259 , LYS B:274 , VAL B:307 , ILE B:323 , GLU B:324 , VAL B:326 , ASP B:387 , PHE B:543 , HOH B:703 , HOH B:718 , HOH B:728 , HOH B:779 , HOH B:835 , HOH B:836
BINDING SITE FOR RESIDUE ATP B 601
3
AC3
SOFTWARE
ARG B:337 , GLN B:338 , ARG B:441 , PRO B:473 , ARG B:474 , HOH B:752
BINDING SITE FOR RESIDUE SO4 B 611
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:251-278,B:251-278)
2: PROTEIN_KINASE_ST (A:365-377,B:365-377)
3: AGC_KINASE_CTER (A:514-579,B:514-579)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
KPCI_HUMAN
260-287
2
A:251-278
B:251-278
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
KPCI_HUMAN
374-386
2
A:365-377
B:365-377
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
KPCI_HUMAN
523-594
2
A:514-579
B:514-579
[
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Exons
(11, 22)
Info
All Exons
Exon 1.7 (A:237-239 | B:237-239)
Exon 1.9b (A:240-282 | B:240-285)
Exon 1.10b (A:287-318 | B:286-318)
Exon 1.11b (A:318-347 | B:318-347)
Exon 1.12 (A:347-392 | B:347-392)
Exon 1.13b (A:393-422 | B:393-422 (gaps))
Exon 1.14c (A:422-464 (gaps) | B:422-464 (gaps...)
Exon 1.15 (A:464-490 | B:464-490)
Exon 1.16b (A:491-520 | B:491-520)
Exon 1.17 (A:521-559 | B:521-559)
Exon 1.18c (A:559-579 | B:559-579)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.6/1.7
02: Boundary 1.7/1.8
03: Boundary 1.8/1.9b
04: Boundary 1.9b/1.10b
05: Boundary 1.10b/1.11b
06: Boundary 1.11b/1.12
07: Boundary 1.12/1.13b
08: Boundary 1.13b/1.14c
09: Boundary 1.14c/1.15
10: Boundary 1.15/1.16b
11: Boundary 1.16b/1.17
12: Boundary 1.17/1.18c
13: Boundary 1.18c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000295797
1
ENSE00001214914
chr3:
169940153-169940558
406
KPCI_HUMAN
1-34
34
0
-
-
1.2
ENST00000295797
2
ENSE00001214893
chr3:
169953018-169953139
122
KPCI_HUMAN
34-75
42
0
-
-
1.3
ENST00000295797
3
ENSE00001214886
chr3:
169977757-169977846
90
KPCI_HUMAN
75-105
31
0
-
-
1.4
ENST00000295797
4
ENSE00001148476
chr3:
169981167-169981217
51
KPCI_HUMAN
105-122
18
0
-
-
1.5
ENST00000295797
5
ENSE00001148468
chr3:
169985703-169985788
86
KPCI_HUMAN
122-150
29
0
-
-
1.6
ENST00000295797
6
ENSE00001148464
chr3:
169988209-169988349
141
KPCI_HUMAN
151-197
47
0
-
-
1.7
ENST00000295797
7
ENSE00001075938
chr3:
169991074-169991128
55
KPCI_HUMAN
198-216
19
2
A:237-239
B:237-239
3
3
1.8
ENST00000295797
8
ENSE00001075940
chr3:
169993017-169993075
59
KPCI_HUMAN
216-235
20
0
-
-
1.9b
ENST00000295797
9b
ENSE00001148448
chr3:
169998015-169998191
177
KPCI_HUMAN
236-294
59
2
A:240-282
B:240-285
43
46
1.10b
ENST00000295797
10b
ENSE00001148444
chr3:
169998954-169999051
98
KPCI_HUMAN
295-327
33
2
A:287-318
B:286-318
32
33
1.11b
ENST00000295797
11b
ENSE00001148433
chr3:
169999670-169999756
87
KPCI_HUMAN
327-356
30
2
A:318-347
B:318-347
30
30
1.12
ENST00000295797
12
ENSE00001148423
chr3:
170002249-170002384
136
KPCI_HUMAN
356-401
46
2
A:347-392
B:347-392
46
46
1.13b
ENST00000295797
13b
ENSE00001075955
chr3:
170009642-170009729
88
KPCI_HUMAN
402-431
30
2
A:393-422
B:393-422 (gaps)
30
30
1.14c
ENST00000295797
14c
ENSE00001075932
chr3:
170011171-170011296
126
KPCI_HUMAN
431-473
43
2
A:422-464 (gaps)
B:422-464 (gaps)
43
43
1.15
ENST00000295797
15
ENSE00001075936
chr3:
170013699-170013778
80
KPCI_HUMAN
473-499
27
2
A:464-490
B:464-490
27
27
1.16b
ENST00000295797
16b
ENSE00001148389
chr3:
170015092-170015181
90
KPCI_HUMAN
500-529
30
2
A:491-520
B:491-520
30
30
1.17
ENST00000295797
17
ENSE00001148380
chr3:
170016783-170016898
116
KPCI_HUMAN
530-568
39
2
A:521-559
B:521-559
39
39
1.18c
ENST00000295797
18c
ENSE00001868699
chr3:
170020828-170023769
2942
KPCI_HUMAN
568-596
29
2
A:559-579
B:559-579
21
21
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3a8wa_ (A:)
1b: SCOP_d3a8wb_ (B:)
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(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d3a8wa_
A:
1b
d3a8wb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3a8wA01 (A:237-329,A:534-574)
1b: CATH_3a8wB01 (B:237-329,B:534-574)
2a: CATH_3a8wA02 (A:330-533)
2b: CATH_3a8wB02 (B:330-533)
View:
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3a8wA01
A:237-329,A:534-574
1b
3a8wB01
B:237-329,B:534-574
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3a8wA02
A:330-533
2b
3a8wB02
B:330-533
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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