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3A8K
Biol. Unit 1
Info
Asym.Unit (300 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (67 KB)
Biol.Unit 4 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ETD97N-EHRED COMPLEX
Authors
:
K. Okamura-Ikeda, H. Hosaka
Date
:
06 Oct 09 (Deposition) - 07 Apr 10 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Glycine Cleavage System, Aminotransferase, Transferase, Lipoyl, Transferase-Transport Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Okamura-Ikeda, H. Hosaka, N. Maita, K. Fujiwara, A. C. Yoshizawa, A. Nakagawa, H. Taniguchi
Crystal Structure Of Aminomethyltransferase In Complex With Dihydrolipoyl-H-Protein Of The Glycine Cleavage System: Implications For Recognition Of Lipoyl Protein Substrate, Disease-Related Mutations, And Reaction Mechanism
J. Biol. Chem. V. 285 18684 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]... (LA2a)
1b: N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]... (LA2b)
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No.
Name
Count
Type
Full Name
1
LA2
1
Mod. Amino Acid
N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]-L-LYSINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BIOTINYL_LIPOYL (E:23-105)
2: LIPOYL (E:48-77)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIOTINYL_LIPOYL
PS50968
Biotinyl/lipoyl domain profile.
GCSH_ECOLI
24-106
1
E:23-105
-
2
LIPOYL
PS00189
2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
GCSH_ECOLI
49-78
1
E:48-77
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 10)
Info
All SCOP Domains
1a: SCOP_d3a8ke_ (E:)
1b: SCOP_d3a8kf_ (F:)
2a: SCOP_d3a8ka2 (A:277-363)
2b: SCOP_d3a8kb2 (B:277-363)
2c: SCOP_d3a8kc2 (C:277-362)
2d: SCOP_d3a8kd2 (D:277-362)
3a: SCOP_d3a8ka1 (A:1-276)
3b: SCOP_d3a8kb1 (B:1-276)
3c: SCOP_d3a8kc1 (C:1-276)
3d: SCOP_d3a8kd1 (D:1-276)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Single hybrid motif
(49)
Family
:
Biotinyl/lipoyl-carrier proteins and domains
(40)
Protein domain
:
Protein H of glycine cleavage system
(11)
Escherichia coli K-12 [TaxId: 83333]
(6)
1a
d3a8ke_
E:
1b
d3a8kf_
F:
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
Aminomethyltransferase beta-barrel domain
(15)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
2a
d3a8ka2
A:277-363
2b
d3a8kb2
B:277-363
2c
d3a8kc2
C:277-362
2d
d3a8kd2
D:277-362
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Folate-binding domain
(17)
Superfamily
:
Folate-binding domain
(17)
Family
:
Aminomethyltransferase folate-binding domain
(15)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
3a
d3a8ka1
A:1-276
3b
d3a8kb1
B:1-276
3c
d3a8kc1
C:1-276
3d
d3a8kd1
D:1-276
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CATH Domains
(3, 10)
Info
all CATH domains
1a: CATH_3a8kA01 (A:1-49,A:138-230)
1b: CATH_3a8kB01 (B:1-49,B:138-230)
1c: CATH_3a8kC01 (C:1-49,C:138-230)
1d: CATH_3a8kD01 (D:1-49,D:138-230)
2a: CATH_3a8kC04 (C:276-362)
2b: CATH_3a8kD04 (D:276-362)
2c: CATH_3a8kA04 (A:276-363)
2d: CATH_3a8kB04 (B:276-363)
3a: CATH_3a8kE00 (E:2-127)
3b: CATH_3a8kF00 (F:2-127)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Gyrase A; domain 2
(166)
Homologous Superfamily
:
Probable tRNA modification gtpase trme; domain 1
(18)
Escherichia coli. Organism_taxid: 83333. Strain: k12 substr. W3110.
(3)
1a
3a8kA01
A:1-49,A:138-230
1b
3a8kB01
B:1-49,B:138-230
1c
3a8kC01
C:1-49,C:138-230
1d
3a8kD01
D:1-49,D:138-230
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Aminomethyltransferase beta-barrel domains
(17)
Escherichia coli. Organism_taxid: 83333. Strain: k12 substr. W3110.
(3)
2a
3a8kC04
C:276-362
2b
3a8kD04
D:276-362
2c
3a8kA04
A:276-363
2d
3a8kB04
B:276-363
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Escherichia coli. Organism_taxid: 83333. Strain: k12 substr. W3110.
(3)
3a
3a8kE00
E:2-127
3b
3a8kF00
F:2-127
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Pfam Domains
(0, 0)
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Asym.Unit (300 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (87 KB)
Header - Biol.Unit 2
Biol.Unit 3 (67 KB)
Header - Biol.Unit 3
Biol.Unit 4 (67 KB)
Header - Biol.Unit 4
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