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3A8K
Asym. Unit
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Asym.Unit (300 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (67 KB)
Biol.Unit 4 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ETD97N-EHRED COMPLEX
Authors
:
K. Okamura-Ikeda, H. Hosaka
Date
:
06 Oct 09 (Deposition) - 07 Apr 10 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Glycine Cleavage System, Aminotransferase, Transferase, Lipoyl, Transferase-Transport Protein Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Okamura-Ikeda, H. Hosaka, N. Maita, K. Fujiwara, A. C. Yoshizawa, A. Nakagawa, H. Taniguchi
Crystal Structure Of Aminomethyltransferase In Complex With Dihydrolipoyl-H-Protein Of The Glycine Cleavage System: Implications For Recognition Of Lipoyl Protein Substrate, Disease-Related Mutations, And Reaction Mechanism
J. Biol. Chem. V. 285 18684 2010
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]... (LA2a)
1b: N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]... (LA2b)
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No.
Name
Count
Type
Full Name
1
LA2
2
Mod. Amino Acid
N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]-L-LYSINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: BIOTINYL_LIPOYL (E:23-105,F:23-105)
2: LIPOYL (E:48-77,F:48-77)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIOTINYL_LIPOYL
PS50968
Biotinyl/lipoyl domain profile.
GCSH_ECOLI
24-106
2
E:23-105
F:23-105
2
LIPOYL
PS00189
2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
GCSH_ECOLI
49-78
2
E:48-77
F:48-77
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 10)
Info
All SCOP Domains
1a: SCOP_d3a8ke_ (E:)
1b: SCOP_d3a8kf_ (F:)
2a: SCOP_d3a8ka2 (A:277-363)
2b: SCOP_d3a8kb2 (B:277-363)
2c: SCOP_d3a8kc2 (C:277-362)
2d: SCOP_d3a8kd2 (D:277-362)
3a: SCOP_d3a8ka1 (A:1-276)
3b: SCOP_d3a8kb1 (B:1-276)
3c: SCOP_d3a8kc1 (C:1-276)
3d: SCOP_d3a8kd1 (D:1-276)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Single hybrid motif
(49)
Family
:
Biotinyl/lipoyl-carrier proteins and domains
(40)
Protein domain
:
Protein H of glycine cleavage system
(11)
Escherichia coli K-12 [TaxId: 83333]
(6)
1a
d3a8ke_
E:
1b
d3a8kf_
F:
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
Aminomethyltransferase beta-barrel domain
(15)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
2a
d3a8ka2
A:277-363
2b
d3a8kb2
B:277-363
2c
d3a8kc2
C:277-362
2d
d3a8kd2
D:277-362
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Folate-binding domain
(17)
Superfamily
:
Folate-binding domain
(17)
Family
:
Aminomethyltransferase folate-binding domain
(15)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
3a
d3a8ka1
A:1-276
3b
d3a8kb1
B:1-276
3c
d3a8kc1
C:1-276
3d
d3a8kd1
D:1-276
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CATH Domains
(3, 10)
Info
all CATH domains
1a: CATH_3a8kA01 (A:1-49,A:138-230)
1b: CATH_3a8kB01 (B:1-49,B:138-230)
1c: CATH_3a8kC01 (C:1-49,C:138-230)
1d: CATH_3a8kD01 (D:1-49,D:138-230)
2a: CATH_3a8kC04 (C:276-362)
2b: CATH_3a8kD04 (D:276-362)
2c: CATH_3a8kA04 (A:276-363)
2d: CATH_3a8kB04 (B:276-363)
3a: CATH_3a8kE00 (E:2-127)
3b: CATH_3a8kF00 (F:2-127)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Gyrase A; domain 2
(166)
Homologous Superfamily
:
Probable tRNA modification gtpase trme; domain 1
(18)
Escherichia coli. Organism_taxid: 83333. Strain: k12 substr. W3110.
(3)
1a
3a8kA01
A:1-49,A:138-230
1b
3a8kB01
B:1-49,B:138-230
1c
3a8kC01
C:1-49,C:138-230
1d
3a8kD01
D:1-49,D:138-230
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Aminomethyltransferase beta-barrel domains
(17)
Escherichia coli. Organism_taxid: 83333. Strain: k12 substr. W3110.
(3)
2a
3a8kC04
C:276-362
2b
3a8kD04
D:276-362
2c
3a8kA04
A:276-363
2d
3a8kB04
B:276-363
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Escherichia coli. Organism_taxid: 83333. Strain: k12 substr. W3110.
(3)
3a
3a8kE00
E:2-127
3b
3a8kF00
F:2-127
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Pfam Domains
(0, 0)
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Asym.Unit (300 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (87 KB)
Header - Biol.Unit 2
Biol.Unit 3 (67 KB)
Header - Biol.Unit 3
Biol.Unit 4 (67 KB)
Header - Biol.Unit 4
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