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Getting 'Exon' information from database.
3A7E
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN COMT COMPLEXED WITH SAM AND 3,5-DINITROCATECHOL
Authors
:
E. Tsuji
Date
:
26 Sep 09 (Deposition) - 15 Sep 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Comt, Alternative Initiation, Catecholamine Metabolism, Magnesium, Methyltransferase, Neurotransmitter Degradation, S-Adenosyl-L- Methionine, Transferase, Cell Membrane, Membrane, Metal-Binding, Phosphoprotein, Signal-Anchor, Transmembrane
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nonaka, T. Momose, T. Ozawa, M. Ozawa, M. Nakatsu, E. Tsuji, K. Okazaki, Y. Takase, T. Kiyotani
Hit To Lead: Comprehensive Strategy Of De Novo Scaffold Generation By Fbdd. Part 1: In Silico Fragments Linking And Verification Of Spatial Proximity Using Inter Ligand Noe Approachs
To Be Published
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 3,5-DINITROCATECHOL (DNCa)
2a: MAGNESIUM ION (MGa)
3a: S-ADENOSYLMETHIONINE (SAMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DNC
1
Ligand/Ion
3,5-DINITROCATECHOL
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
SAM
1
Ligand/Ion
S-ADENOSYLMETHIONINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:141 , ASP A:169 , ASN A:170 , SAM A:216 , DNC A:217
BINDING SITE FOR RESIDUE MG A 215
2
AC2
SOFTWARE
MET A:40 , VAL A:42 , GLU A:64 , GLY A:66 , ALA A:67 , TYR A:68 , TYR A:71 , SER A:72 , ILE A:89 , GLU A:90 , ILE A:91 , GLY A:117 , SER A:119 , GLN A:120 , ASP A:141 , HIS A:142 , TRP A:143 , ARG A:146 , MG A:215 , DNC A:217 , HOH A:251
BINDING SITE FOR RESIDUE SAM A 216
3
AC3
SOFTWARE
TRP A:38 , ASP A:141 , HIS A:142 , TRP A:143 , LYS A:144 , ASP A:169 , ASN A:170 , PRO A:174 , GLU A:199 , MG A:215 , SAM A:216
BINDING SITE FOR RESIDUE DNC A 217
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013926 (A22S, chain A, )
2: VAR_020274 (A52T, chain A, )
3: VAR_020275 (A96V, chain A, )
4: VAR_005139 (V108M, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013926
A
72
S
COMT_HUMAN
Polymorphism
6267
A
A
22
S
2
UniProt
VAR_020274
A
102
T
COMT_HUMAN
Polymorphism
5031015
A
A
52
T
3
UniProt
VAR_020275
A
146
V
COMT_HUMAN
Polymorphism
4986871
A
A
96
V
4
UniProt
VAR_005139
V
158
M
COMT_HUMAN
Polymorphism
4680
A
V
108
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.7b (A:3-47)
Exon 1.9a (A:47-111)
Exon 1.10b (A:112-155)
Exon 1.12g (A:156-214)
View:
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All Exon Boundaries
1: Boundary 1.5b/1.7b
2: Boundary 1.7b/1.9a
3: Boundary 1.9a/1.10b
4: Boundary 1.10b/1.12g
5: Boundary 1.12g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000361682
1a
ENSE00001871649
chr22:
19929130-19929420
291
COMT_HUMAN
-
0
0
-
-
1.5b
ENST00000361682
5b
ENSE00001056469
chr22:
19948722-19948812
91
COMT_HUMAN
-
0
0
-
-
1.7b
ENST00000361682
7b
ENSE00001656924
chr22:
19950050-19950338
289
COMT_HUMAN
1-97
97
1
A:3-47
45
1.9a
ENST00000361682
9a
ENSE00001295143
chr22:
19951089-19951282
194
COMT_HUMAN
97-161
65
1
A:47-111
65
1.10b
ENST00000361682
10b
ENSE00001316383
chr22:
19951691-19951822
132
COMT_HUMAN
162-205
44
1
A:112-155
44
1.12g
ENST00000361682
12g
ENSE00001297813
chr22:
19956059-19957498
1440
COMT_HUMAN
206-271
66
1
A:156-214
59
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3a7ea_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
COMT-like
(31)
Protein domain
:
automated matches
(25)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d3a7ea_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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