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3A79
Asym. Unit
Info
Asym.Unit (388 KB)
Biol.Unit 1 (378 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TLR2-TLR6-PAM2CSK4 COMPLEX
Authors
:
J. Y. Kang, M. S. Jin, J. -O. Lee
Date
:
20 Sep 09 (Deposition) - 24 Nov 09 (Release) - 27 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Toll-Like Receptor, Diacyl Lipopeptide, Innate Immunity, Leucine Rich Repeat, Cell Membrane, Cytoplasmic Vesicle, Disulfide Bond, Glycoprotein, Immune Response, Inflammatory Response, Leucine-Rich Repeat, Membrane, Receptor, Transmembrane, Phosphoprotein, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Y. Kang, X. Nan, M. S. Jin, S. -J. Youn, Y. H. Ryu, S. Mah, S. H. Han, H. Lee, S. -G. Paik, J. -O. Lee
Recognition Of Lipopeptide Patterns By Toll-Like Receptor 2-Toll-Like Receptor 6 Heterodimer
Immunity V. 31 873 2009
[
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
4a: (2S)-PROPANE-1,2-DIYL DIHEXADECANO... (PXSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
4
PXS
1
Ligand/Ion
(2S)-PROPANE-1,2-DIYL DIHEXADECANOATE
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:262 , PHE A:266 , LEU A:269 , PHE A:284 , ILE A:319 , PHE A:325 , TYR A:326 , SER A:346 , LYS A:347 , VAL A:348 , PHE A:349 , LEU A:350 , VAL A:351 , PRO A:352 , PHE A:355 , CYS C:11
BINDING SITE FOR RESIDUE PXS C 581
02
AC2
SOFTWARE
ASN A:147
BINDING SITE FOR RESIDUE NAG A 811
03
AC3
SOFTWARE
SER A:388 , LYS A:413 , ASN A:414
BINDING SITE FOR RESIDUE NAG A 821
04
AC4
SOFTWARE
SER A:421 , PHE A:440 , ASN A:442 , ASP A:463 , NAG A:832
BINDING SITE FOR RESIDUE NAG A 831
05
AC5
SOFTWARE
ARG A:422 , ARG A:486 , NAG A:831
BINDING SITE FOR RESIDUE NAG A 832
06
AC6
SOFTWARE
CYS B:118 , ALA B:121 , ASN B:144 , GLN B:160
BINDING SITE FOR RESIDUE NAG B 911
07
AC7
SOFTWARE
GLN B:160 , ASN B:214 , SER B:216
BINDING SITE FOR RESIDUE NAG B 921
08
AC8
SOFTWARE
ASN B:253 , GLU B:279 , TYR B:280 , NAG B:932
BINDING SITE FOR RESIDUE NAG B 931
09
AC9
SOFTWARE
NAG B:931
BINDING SITE FOR RESIDUE NAG B 932
10
BC1
SOFTWARE
HIS B:258 , ASN B:285 , NAG B:942
BINDING SITE FOR RESIDUE NAG B 941
11
BC2
SOFTWARE
ASN B:206 , NAG B:941 , BMA B:943
BINDING SITE FOR RESIDUE NAG B 942
12
BC3
SOFTWARE
ASN B:206 , NAG B:942
BINDING SITE FOR RESIDUE BMA B 943
13
BC4
SOFTWARE
GLU B:310 , SER B:339 , PHE B:357 , ASN B:359 , ILE B:383 , NAG B:952
BINDING SITE FOR RESIDUE NAG B 951
14
BC5
SOFTWARE
GLU B:310 , GLN B:362 , ARG B:386 , NAG B:951 , BMA B:953
BINDING SITE FOR RESIDUE NAG B 952
15
BC6
SOFTWARE
NAG B:952
BINDING SITE FOR RESIDUE BMA B 953
16
BC7
SOFTWARE
SER B:374 , LYS B:377 , ASN B:401 , NAG B:962
BINDING SITE FOR RESIDUE NAG B 961
17
BC8
SOFTWARE
NAG B:961 , BMA B:963
BINDING SITE FOR RESIDUE NAG B 962
18
BC9
SOFTWARE
NAG B:962
BINDING SITE FOR RESIDUE BMA B 963
19
CC1
SOFTWARE
SER B:411 , LEU B:412 , ASN B:434 , SER B:436 , ASP B:456 , NAG B:972
BINDING SITE FOR RESIDUE NDG B 971
20
CC2
SOFTWARE
HIS B:458 , NDG B:971
BINDING SITE FOR RESIDUE NAG B 972
21
CC3
SOFTWARE
ASN B:195 , ASN B:218
BINDING SITE FOR RESIDUE NAG B 981
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 21)
Info
All PROSITE Patterns/Profiles
1: LRR (B:53-76|B:77-98|B:101-122|B:123-14...)
2: TIR (A:553-574,B:527-554)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
TLR6_MOUSE
53-76
77-98
101-122
123-143
378-399
404-425
429-449
451-473
474-495
496-517
10
B:53-76
B:77-98
B:101-122
B:123-143
B:378-399
B:404-425
B:429-449
B:451-473
B:474-489
B:493-493
TLR2_MOUSE
53-74
77-98
101-122
125-146
361-381
388-409
414-435
478-499
458-477
9
A:53-74
A:77-98
A:101-122
A:125-146
A:361-381
A:388-409
A:414-435
A:478-499
A:458-477
2
TIR
PS50104
TIR domain profile.
TLR2_MOUSE
639-784
1
A:553-574
TLR6_MOUSE
640-784
1
B:527-554
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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Asym.Unit (388 KB)
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