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3A70
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PSEUDOMONAS SP. MIS38 LIPASE IN COMPLEX WITH DIETHYL PHOSPHATE
Authors
:
C. Angkawidjaja, H. Matsumura, Y. Koga, K. Takano, S. Kanaya
Date
:
10 Sep 09 (Deposition) - 26 May 10 (Release) - 26 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Family I. 3 Lipase, Beta-Roll, Open Conformation, Inhibitor-Bound, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Angkawidjaja, H. Matsumura, Y. Koga, K. Takano, S. Kanaya
X-Ray Crystallographic And Md Simulation Studies On The Mechanism Of Interfacial Activation Of A Family I. 3 Lipase With Two Lids
J. Mol. Biol. 2010
[
close entry info
]
Hetero Components
(4, 28)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
3a: DIETHYL PHOSPHONATE (DEPa)
3b: DIETHYL PHOSPHONATE (DEPb)
4a: P-NITROPHENOL (NPOa)
4b: P-NITROPHENOL (NPOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CA
22
Ligand/Ion
CALCIUM ION
3
DEP
2
Ligand/Ion
DIETHYL PHOSPHONATE
4
NPO
2
Ligand/Ion
P-NITROPHENOL
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:253 , ASP A:275 , ASP A:283 , ASN A:284 , HOH A:687 , HOH A:1069
BINDING SITE FOR RESIDUE CA A 618
02
AC2
SOFTWARE
LYS A:278 , ALA A:281 , ASP A:283 , ASP A:337 , HOH A:664 , HOH A:1070
BINDING SITE FOR RESIDUE CA A 619
03
AC3
SOFTWARE
SER A:374 , SER A:376 , ASP A:378 , GLY A:391 , ALA A:393 , ASP A:396
BINDING SITE FOR RESIDUE CA A 620
04
AC4
SOFTWARE
GLY A:383 , GLY A:385 , ASP A:387 , ASP A:400 , GLY A:402 , ASN A:405
BINDING SITE FOR RESIDUE CA A 621
05
AC5
SOFTWARE
ARG A:392 , GLY A:394 , ASP A:396 , GLY A:409 , ALA A:411 , ASN A:414
BINDING SITE FOR RESIDUE CA A 622
06
AC6
SOFTWARE
THR A:494 , GLY A:496 , ASP A:498 , GLY A:511 , ASP A:513 , ASP A:516
BINDING SITE FOR RESIDUE CA A 623
07
AC7
SOFTWARE
LEU A:512 , ASP A:513 , GLY A:514 , ASP A:516 , GLY A:529 , ALA A:531 , ASP A:534
BINDING SITE FOR RESIDUE CA A 624
08
AC8
SOFTWARE
GLY A:521 , GLY A:523 , ASP A:525 , SER A:538 , GLY A:540 , ASP A:543
BINDING SITE FOR RESIDUE CA A 625
09
AC9
SOFTWARE
GLY A:530 , GLY A:532 , ASP A:534 , PHE A:551 , ASP A:554 , HOH A:791
BINDING SITE FOR RESIDUE CA A 626
10
BC1
SOFTWARE
GLY A:541 , THR A:560 , ASN A:562 , ASP A:563 , HOH A:648 , HOH A:832
BINDING SITE FOR RESIDUE CA A 627
11
BC2
SOFTWARE
THR A:118 , GLN A:120 , SER A:144 , ASP A:153 , ASP A:157 , HOH A:782
BINDING SITE FOR RESIDUE CA A 628
12
BC3
SOFTWARE
TYR A:29 , GLY A:142 , THR A:143 , SER A:207 , LEU A:208 , VAL A:257 , TRP A:310 , HIS A:313 , NPO A:630
BINDING SITE FOR RESIDUE DEP A 629
13
BC4
SOFTWARE
LEU A:32 , ASP A:33 , PHE A:36 , VAL A:66 , DEP A:629
BINDING SITE FOR RESIDUE NPO A 630
14
BC5
SOFTWARE
ASN A:548
BINDING SITE FOR RESIDUE ACT A 631
15
BC6
SOFTWARE
GLU C:253 , ASP C:275 , ASP C:283 , ASN C:284 , HOH C:1003 , HOH C:1004
BINDING SITE FOR RESIDUE CA C 618
16
BC7
SOFTWARE
LYS C:278 , ALA C:281 , ASP C:283 , ASP C:337 , HOH C:1164 , HOH C:1230
BINDING SITE FOR RESIDUE CA C 619
17
BC8
SOFTWARE
SER C:374 , SER C:376 , ASP C:378 , GLY C:391 , ALA C:393 , ASP C:396
BINDING SITE FOR RESIDUE CA C 620
18
BC9
SOFTWARE
GLY C:383 , GLY C:385 , ASP C:387 , ASP C:400 , GLY C:402 , ASN C:405
BINDING SITE FOR RESIDUE CA C 621
19
CC1
SOFTWARE
ARG C:392 , GLY C:394 , ASP C:396 , GLY C:409 , ALA C:411 , ASN C:414
BINDING SITE FOR RESIDUE CA C 622
20
CC2
SOFTWARE
THR C:494 , GLY C:496 , ASP C:498 , GLY C:511 , ASP C:513 , ASP C:516
BINDING SITE FOR RESIDUE CA C 623
21
CC3
SOFTWARE
LEU C:512 , GLY C:514 , ASP C:516 , GLY C:529 , ALA C:531 , ASP C:534
BINDING SITE FOR RESIDUE CA C 624
22
CC4
SOFTWARE
GLY C:521 , GLY C:523 , ASP C:525 , SER C:538 , GLY C:540 , ASP C:543
BINDING SITE FOR RESIDUE CA C 625
23
CC5
SOFTWARE
GLY C:530 , GLY C:532 , ASP C:534 , PHE C:551 , ASP C:554 , HOH C:720
BINDING SITE FOR RESIDUE CA C 626
24
CC6
SOFTWARE
GLY C:541 , THR C:560 , ASN C:562 , ASP C:563 , HOH C:869
BINDING SITE FOR RESIDUE CA C 627
25
CC7
SOFTWARE
THR C:118 , GLN C:120 , SER C:144 , ASP C:153 , ASP C:157 , HOH C:740
BINDING SITE FOR RESIDUE CA C 628
26
CC8
SOFTWARE
GLY C:142 , THR C:143 , ASP C:161 , SER C:207 , LEU C:208 , TRP C:310 , HIS C:313 , NPO C:630
BINDING SITE FOR RESIDUE DEP C 629
27
CC9
SOFTWARE
LEU C:32 , ASP C:33 , ALA C:56 , VAL C:66 , DEP C:629
BINDING SITE FOR RESIDUE NPO C 630
28
DC1
SOFTWARE
ASN C:548
BINDING SITE FOR RESIDUE ACT C 631
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (216 KB)
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