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3A11
Asym. Unit
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Asym.Unit (320 KB)
Biol.Unit 1 (314 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS KOD1
Authors
:
A. Nakamura, M. Fujihashi, Y. Nishiba, S. Yoshida, A. Yano, H. Atomi, T. K. Miki
Date
:
25 Mar 09 (Deposition) - 31 Mar 10 (Release) - 12 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Isomerase, Hexamer, Rossmann Fold, Initiation Factor
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Reference
:
A. Nakamura, M. Fujihashi, R. Aono, T. Sato, Y. Nishiba, S. Yoshida, A. Yano, H. Atomi, T. Imanaka, K. Miki
Dynamic, Ligand-Dependent Conformational Change Triggers Reaction Of Ribose-1, 5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1
J. Biol. Chem. V. 287 20784 2012
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
2b: DI(HYDROXYETHYL)ETHER (PEGb)
2c: DI(HYDROXYETHYL)ETHER (PEGc)
2d: DI(HYDROXYETHYL)ETHER (PEGd)
2e: DI(HYDROXYETHYL)ETHER (PEGe)
2f: DI(HYDROXYETHYL)ETHER (PEGf)
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No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
2
PEG
6
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:224 , ARG A:227 , VAL A:228 , TYR A:286 , ASP A:288
BINDING SITE FOR RESIDUE PEG A 401
2
AC2
SOFTWARE
GLU A:285 , TYR A:286 , LYS E:224 , ARG E:227
BINDING SITE FOR RESIDUE PEG E 401
3
AC3
SOFTWARE
LYS B:224 , VAL B:228 , THR B:230 , TYR B:286 , ASP B:288
BINDING SITE FOR RESIDUE PEG B 401
4
AC4
SOFTWARE
ASP B:304 , HOH B:678 , ASP D:304 , ASP F:304
BINDING SITE FOR RESIDUE MG B 411
5
AC5
SOFTWARE
LYS C:224 , ARG C:227 , VAL C:228 , GLU C:285 , ASP C:288
BINDING SITE FOR RESIDUE PEG C 401
6
AC6
SOFTWARE
LYS D:224 , ARG D:227 , VAL D:228 , ASP D:288 , HOH D:619
BINDING SITE FOR RESIDUE PEG D 401
7
AC7
SOFTWARE
ASP A:304 , ASP E:304
BINDING SITE FOR RESIDUE MG E 411
8
AC8
SOFTWARE
LYS F:224 , VAL F:228 , GLU F:285 , TYR F:286 , ASP F:288
BINDING SITE FOR RESIDUE PEG F 401
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3a11B02 (B:110-310)
1b: CATH_3a11C02 (C:110-310)
1c: CATH_3a11E02 (E:110-310)
1d: CATH_3a11D02 (D:110-310)
1e: CATH_3a11F02 (F:110-310)
1f: CATH_3a11A02 (A:110-310)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Translation initiation factor eif-2b; domain 2
(8)
Thermococcus kodakaraensis. Organism_taxid: 69014. Strain: kod1.
(1)
1a
3a11B02
B:110-310
1b
3a11C02
C:110-310
1c
3a11E02
E:110-310
1d
3a11D02
D:110-310
1e
3a11F02
F:110-310
1f
3a11A02
A:110-310
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Pfam Domains
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Asymmetric Unit 1
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