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2ZXG
Asym. Unit
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Asym.Unit (170 KB)
Biol.Unit 1 (165 KB)
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(1)
Title
:
AMINOPEPTIDASE N COMPLEXED WITH THE AMINOPHOSPHINIC INHIBITOR OF PL250, A TRANSITION STATE ANALOGUE
Authors
:
Y. Nakajima, K. Ito, T. Yoshimoto
Date
:
24 Dec 08 (Deposition) - 25 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Clan Ma, Family M1, Zinc Peptidase, Inhibitor Complex, Transition State, Aminopeptidase, Cell Inner Membrane, Cell Membrane, Hydrolase, Membrane, Metal-Binding, Metalloprotease, Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Fournie-Zaluski, H. Poras, B. P. Roques, Y. Nakajima, K. Ito, T. Yoshimoto
Structure Of Aminopeptidase N From Escherichia Coli Complexed With The Transition-State Analogue Aminophosphini Inhibitor Pl250
Acta Crystallogr. , Sect. D V. 65 814 2009
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: N-{(2S)-3-[(1R)-1-AMINOETHYL](HYDR... (S23a)
3a: SULFATE ION (SO4a)
4a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
S23
1
Ligand/Ion
N-{(2S)-3-[(1R)-1-AMINOETHYL](HYDROXY)PHOSPHORYL-2-BENZYLPROPANOYL}-L-PHENYLALANINE
3
SO4
1
Ligand/Ion
SULFATE ION
4
ZN
1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:297 , HIS A:301 , GLU A:320 , S23 A:901
BINDING SITE FOR RESIDUE ZN A 900
02
AC2
SOFTWARE
GLU A:121 , ASN A:259 , MET A:260 , GLY A:261 , ALA A:262 , GLU A:264 , VAL A:294 , HIS A:297 , GLU A:298 , HIS A:301 , LYS A:319 , GLU A:320 , TYR A:376 , TYR A:381 , ARG A:825 , ZN A:900 , HOH A:1447 , HOH A:1592
BINDING SITE FOR RESIDUE S23 A 901
03
AC3
SOFTWARE
ARG A:222 , ARG A:279 , GLN A:741 , ASN A:742
BINDING SITE FOR RESIDUE SO4 A 902
04
AC4
SOFTWARE
SER A:63 , VAL A:64 , TRP A:71 , TRP A:74 , ARG A:669 , VAL A:670 , GLU A:671 , HOH A:1142 , HOH A:1514
BINDING SITE FOR RESIDUE GOL A 903
05
AC5
SOFTWARE
ASP A:58 , LEU A:59 , LYS A:60 , GLU A:97 , ILE A:98 , GOL A:908 , HOH A:1361 , HOH A:1971
BINDING SITE FOR RESIDUE GOL A 904
06
AC6
SOFTWARE
PRO A:473 , ASP A:474 , ALA A:476 , HOH A:1139 , HOH A:1193 , HOH A:1283 , HOH A:1775
BINDING SITE FOR RESIDUE GOL A 905
07
AC7
SOFTWARE
ARG A:681 , GLN A:703 , ALA A:707 , ASN A:708 , ASN A:709 , ASP A:712 , HOH A:1237 , HOH A:1460
BINDING SITE FOR RESIDUE GOL A 906
08
AC8
SOFTWARE
ASN A:623 , GLY A:791 , HOH A:1127 , HOH A:1534 , HOH A:1657 , HOH A:1905
BINDING SITE FOR RESIDUE GOL A 907
09
AC9
SOFTWARE
ASP A:58 , ILE A:98 , SER A:99 , GOL A:904 , HOH A:1058 , HOH A:1064 , HOH A:1927
BINDING SITE FOR RESIDUE GOL A 908
10
BC1
SOFTWARE
HIS A:11 , ARG A:468 , THR A:469 , LYS A:478 , GLN A:479 , HOH A:1229 , HOH A:1280 , HOH A:1397
BINDING SITE FOR RESIDUE GOL A 909
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:294-303)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
AMPN_ECOLI
294-303
1
A:294-303
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M1_2zxgA01 (A:19-384)
2a: PFAM_DUF3458_2zxgA02 (A:457-827)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M1
(15)
Escherichia coli (strain K12)
(2)
1a
Peptidase_M1-2zxgA01
A:19-384
Clan
:
TPR
(230)
Family
:
DUF3458
(4)
Escherichia coli (strain K12)
(2)
2a
DUF3458-2zxgA02
A:457-827
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Chain A
Asymmetric Unit 1
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