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2ZVO
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
NEMO COZI DOMAIN IN COMPLEX WITH DIUBIQUITIN IN C2 SPACE GROUP
Authors
:
S. Rahighi, F. Ikeda, M. Kawasaki, M. Akutsu, N. Suzuki, R. Kato, T. Kensche, T. Uejima, S. Bloor, D. Komander, F. Randow, S. Wakatsuki, I. Dikic
Date
:
12 Nov 08 (Deposition) - 24 Mar 09 (Release) - 14 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,D,G
Biol. Unit 1: A,B,D,G (1x)
Keywords
:
Nf-Kb Signaling, Ubiquitin Binding, Coiled Coil, Cytoplasm, Metal-Binding, Nucleus, Phosphoprotein, Transcription, Transcription Regulation, Ubl Conjugation, Zinc, Zinc- Finger, Transcription/Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Rahighi, F. Ikeda, M. Kawasaki, M. Akutsu, N. Suzuki, R. Kato, T. Kensche, T. Uejima, S. Bloor, D. Komander, F. Randow, S. Wakatsuki, I. Dikic
Specific Recognition Of Linear Ubiquitin Chains By Nemo Is Important For Nf-Kappab Activation
Cell(Cambridge, Mass. ) V. 136 1098 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (-|-|-|-|-|-|-|A:1-76,G:1-76|A:77-1...)
2: UBIQUITIN_1 (-|-|-|-|-|-|-|A:27-52,G:27-52|A:10...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
4
-
-
-
-
-
-
-
A:1-76
G:1-76
A:77-148
G:77-146
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
4
-
-
-
-
-
-
-
A:27-52
G:27-52
A:103-128
G:103-128
[
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Exons
(3, 6)
Info
All Exons
Exon 1.11b (B:250-297 | D:250-297)
Exon 1.12b (B:298-337 | D:298-337)
Exon 2.2 (A:0-148 | G:1-146)
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All Exon Boundaries
1: Boundary 1.10b/1.11b
2: Boundary 1.11b/1.12b
3: Boundary 1.12b/1.13
4: Boundary 2.1/2.2
5: Boundary 2.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENSMUST00000114133
2c
ENSMUSE00000450177
X:71669951-71670054
104
NEMO_MOUSE
-
0
0
-
-
1.3b
ENSMUST00000114133
3b
ENSMUSE00000908250
X:71673101-71673241
141
NEMO_MOUSE
-
0
0
-
-
1.6b
ENSMUST00000114133
6b
ENSMUSE00000209243
X:71678144-71678345
202
NEMO_MOUSE
1-63
63
0
-
-
1.7b
ENSMUST00000114133
7b
ENSMUSE00000209248
X:71679142-71679353
212
NEMO_MOUSE
63-133
71
0
-
-
1.8b
ENSMUST00000114133
8b
ENSMUSE00000209244
X:71682503-71682621
119
NEMO_MOUSE
134-173
40
0
-
-
1.9b
ENSMUST00000114133
9b
ENSMUSE00000209240
X:71684246-71684398
153
NEMO_MOUSE
173-224
52
0
-
-
1.10b
ENSMUST00000114133
10b
ENSMUSE00000898654
X:71685214-71685289
76
NEMO_MOUSE
224-249
26
0
-
-
1.11b
ENSMUST00000114133
11b
ENSMUSE00000891147
X:71688684-71688827
144
NEMO_MOUSE
250-297
48
2
B:250-297
D:250-297
48
48
1.12b
ENSMUST00000114133
12b
ENSMUSE00000209247
X:71689111-71689253
143
NEMO_MOUSE
298-345
48
2
B:298-337
D:298-337
40
40
1.13
ENSMUST00000114133
13
ENSMUSE00000209245
X:71693198-71693259
62
NEMO_MOUSE
345-366
22
0
-
-
1.14g
ENSMUST00000114133
14g
ENSMUSE00000698234
X:71693556-71699193
5638
NEMO_MOUSE
366-412
47
0
-
-
2.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
2.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
2
A:0-148
G:1-146
149
146
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2zvoa1 (A:0-76)
1b: SCOP_d2zvoa2 (A:77-148)
1c: SCOP_d2zvog1 (G:1-76)
1d: SCOP_d2zvog2 (G:77-146)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
automated matches
(80)
Human (Homo sapiens) [TaxId: 9606]
(62)
1a
d2zvoa1
A:0-76
1b
d2zvoa2
A:77-148
1c
d2zvog1
G:1-76
1d
d2zvog2
G:77-146
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2zvoB00 (B:250-337)
1b: CATH_2zvoD00 (D:250-337)
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Organisms
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Nemo cc2-lz domain - 1d5 darpin complex
(4)
Human (Homo sapiens)
(2)
1a
2zvoB00
B:250-337
1b
2zvoD00
D:250-337
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Pfam Domains
(0, 0)
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Chain G
Asymmetric Unit 1
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