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2ZTG
Asym. Unit
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Asym.Unit (130 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS ALANYL-TRNA SYNTHETASE LACKING THE C-TERMINAL DIMERIZATION DOMAIN IN COMPLEX WITH ALA-SA
Authors
:
M. Naganuma, S. Sekine, R. Fukunaga, S. Yokoyama
Date
:
01 Oct 08 (Deposition) - 30 Jun 09 (Release) - 30 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Class-Ii Aminoacyl-Trna Synthetase, Aminoacyl-Trna Synthetase, Atp-Binding, Cytoplasm, Ligase, Nucleotide- Binding, Protein Biosynthesis, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
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Reference
:
M. Naganuma, S. Sekine, R. Fukunaga, S. Yokoyama
Unique Protein Architecture Of Alanyl-Trna Synthetase For Aminoacylation, Editing, And Dimerization.
Proc. Natl. Acad. Sci. Usa V. 106 8489 2009
(for further references see the
PDB file header
)
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADEN... (A5Aa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
A5A
1
Ligand/Ion
'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE
2
MSE
15
Mod. Amino Acid
SELENOMETHIONINE
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(3, 3)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:128 , ASP A:131 , ARG A:140 , HIS A:141 , LEU A:142 , PHE A:145 , MSE A:147 , TRP A:191 , GLU A:209 , VAL A:210 , ALA A:211 , THR A:212 , VAL A:214 , ASP A:242 , THR A:243 , GLY A:244 , GLY A:246 , ARG A:249 , HOH A:1025 , HOH A:1152
BINDING SITE FOR RESIDUE A5A A 801
2
AC2
SOFTWARE
HIS A:452 , HOH A:1054 , HOH A:1055 , HOH A:1129 , HOH A:1144 , HOH A:1146
BINDING SITE FOR RESIDUE ZN A 901
3
AC3
SOFTWARE
HIS A:600 , HIS A:604 , CYS A:703 , HIS A:707 , HOH A:1114
BINDING SITE FOR RESIDUE ZN A 902
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
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All PROSITE Patterns/Profiles
1: AA_TRNA_LIGASE_II_ALA (A:60-739)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRNA_LIGASE_II_ALA
PS50860
Alanyl-transfer RNA synthetases family profile.
SYA_ARCFU
60-746
1
A:60-739
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_tRNA_SAD_2ztgA01 (A:691-733)
2a: PFAM_tRNA_synt_2c_2ztgA02 (A:64-592)
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Clans
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(
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: tRNA_SAD]
(15)
Family
:
tRNA_SAD
(15)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(1)
1a
tRNA_SAD-2ztgA01
A:691-733
Clan
:
tRNA_synt_II
(64)
Family
:
tRNA-synt_2c
(8)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(1)
2a
tRNA-synt_2c-2ztgA02
A:64-592
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