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2ZQZ
Biol. Unit 2
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Asym.Unit (300 KB)
Biol.Unit 1 (199 KB)
Biol.Unit 2 (198 KB)
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(1)
Title
:
R-STATE STRUCTURE OF ALLOSTERIC L-LACTATE DEHYDROGENASE FROM LACTOBACILLUS CASEI
Authors
:
K. Arai, T. Ishimitsu, S. Fushinobu, H. Uchikoba, H. Matsuzawa, H. Taguchi
Date
:
22 Aug 08 (Deposition) - 08 Sep 09 (Release) - 09 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D,E,F (1x)
Keywords
:
Oxidoreductase, Rossmann Fold, Cytoplasm, Glycolysis, Nad, Phosphoprotein
(Keyword Search:
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Reference
:
K. Arai, T. Ishimitsu, S. Fushinobu, H. Uchikoba, H. Matsuzawa, H. Taguchi
Active And Inactive State Structures Of Unliganded Lactobacillus Casei Allosteric L-Lactate Dehydrogenase.
Proteins V. 78 681 2010
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
8: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
LEU C:165 , ARG C:169 , HIS C:193 , ALA C:237 , THR C:247
BINDING SITE FOR RESIDUE SO4 C 3
2
AC6
SOFTWARE
ARG C:171 , HIS C:186 , TYR C:188 , HOH C:341 , HOH C:349 , HOH C:361 , SER F:184 , HIS F:186 , GLY F:207 , GLY F:208 , HOH F:360
BINDING SITE FOR RESIDUE SO4 C 9
3
AC7
SOFTWARE
LEU D:165 , ARG D:169 , HIS D:193 , ALA D:237 , THR D:247
BINDING SITE FOR RESIDUE SO4 D 5
4
AC8
SOFTWARE
ARG D:171 , HIS D:186 , TYR D:188 , HOH D:347 , HOH D:382 , HIS E:186 , HOH E:341
BINDING SITE FOR RESIDUE SO4 D 11
5
AC9
SOFTWARE
ASN E:138 , LEU E:165 , ARG E:169 , HIS E:193 , ALA E:237 , THR E:247 , HOH E:340 , HOH E:374
BINDING SITE FOR RESIDUE SO4 E 4
6
BC1
SOFTWARE
SER D:184 , HIS D:186 , GLY D:207 , HOH D:361 , HOH D:375 , ARG E:171 , HIS E:186 , TYR E:188 , HOH E:343 , HOH E:353 , HOH E:379
BINDING SITE FOR RESIDUE SO4 E 10
7
BC2
SOFTWARE
LEU F:165 , ARG F:169 , HIS F:193 , ALA F:237 , THR F:247 , HOH F:340 , HOH F:353 , HOH F:355
BINDING SITE FOR RESIDUE SO4 F 6
8
BC3
SOFTWARE
SER C:184 , HIS C:186 , GLY C:207 , GLY C:208 , ARG F:171 , HIS F:186 , TYR F:188 , HOH F:341 , HOH F:349 , HOH F:362 , HOH F:376
BINDING SITE FOR RESIDUE SO4 F 339
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: L_LDH (C:190-196,D:190-196,E:190-196,F:19...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
L_LDH
PS00064
L-lactate dehydrogenase active site.
LDH_LACCA
178-184
4
-
-
C:190-196
D:190-196
E:190-196
F:190-196
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2zqza2 (A:163-329)
1b: SCOP_d2zqze2 (E:163-329)
1c: SCOP_d2zqzf2 (F:163-330)
1d: SCOP_d2zqzb2 (B:163-330)
1e: SCOP_d2zqzc2 (C:163-328)
1f: SCOP_d2zqzd2 (D:163-329)
2a: SCOP_d2zqza1 (A:17-162)
2b: SCOP_d2zqze1 (E:17-162)
2c: SCOP_d2zqzf1 (F:17-162)
2d: SCOP_d2zqzb1 (B:17-162)
2e: SCOP_d2zqzc1 (C:17-162)
2f: SCOP_d2zqzd1 (D:17-162)
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Classes
(
)
(
)
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
Lactate dehydrogenase
(55)
Lactobacillus casei [TaxId: 1582]
(6)
1a
d2zqza2
A:163-329
1b
d2zqze2
E:163-329
1c
d2zqzf2
F:163-330
1d
d2zqzb2
B:163-330
1e
d2zqzc2
C:163-328
1f
d2zqzd2
D:163-329
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Lactate dehydrogenase
(53)
Lactobacillus casei [TaxId: 1582]
(6)
2a
d2zqza1
A:17-162
2b
d2zqze1
E:17-162
2c
d2zqzf1
F:17-162
2d
d2zqzb1
B:17-162
2e
d2zqzc1
C:17-162
2f
d2zqzd1
D:17-162
[
close SCOP info
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2zqzB01 (B:17-162)
1b: CATH_2zqzE01 (E:17-162)
1c: CATH_2zqzF01 (F:17-162)
1d: CATH_2zqzA01 (A:17-162)
1e: CATH_2zqzD01 (D:17-162)
1f: CATH_2zqzC01 (C:17-162)
2a: CATH_2zqzA02 (A:163-329)
2b: CATH_2zqzD02 (D:163-329)
2c: CATH_2zqzE02 (E:163-329)
2d: CATH_2zqzB02 (B:163-330)
2e: CATH_2zqzF02 (F:163-330)
2f: CATH_2zqzC02 (C:163-328)
View:
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Lactobacillus casei. Organism_taxid: 1582. Strain: iam 12473.
(2)
1a
2zqzB01
B:17-162
1b
2zqzE01
E:17-162
1c
2zqzF01
F:17-162
1d
2zqzA01
A:17-162
1e
2zqzD01
D:17-162
1f
2zqzC01
C:17-162
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Lactobacillus casei. Organism_taxid: 1582. Strain: iam 12473.
(2)
2a
2zqzA02
A:163-329
2b
2zqzD02
D:163-329
2c
2zqzE02
E:163-329
2d
2zqzB02
B:163-330
2e
2zqzF02
F:163-330
2f
2zqzC02
C:163-328
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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