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2ZPA
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRNA(MET) CYTIDINE ACETYLTRANSFERASE
Authors
:
S. Chimnaronk, T. Manita, M. Yao, I. Tanaka
Date
:
08 Jul 08 (Deposition) - 07 Apr 09 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Rna Modification Enzyme, Rna Helicase, Acetyltransferase, Gcn5 Acetyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Chimnaronk, T. Suzuki, T. Manita, Y. Ikeuchi, M. Yao, T. Suzuki, I. Tanaka
Rna Helicase Module In An Acetyltransferase That Modifies A Specific Trna Anticodon
Embo J. V. 28 1362 2009
(for further references see the
PDB file header
)
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: ACETYL COENZYME *A (ACOa)
1b: ACETYL COENZYME *A (ACOb)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
4a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACO
2
Ligand/Ion
ACETYL COENZYME *A
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
MSE
21
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:201 , GLY B:202 , ARG B:203 , GLY B:204 , LYS B:205 , SER B:206 , HOH B:979
BINDING SITE FOR RESIDUE SO4 B 801
2
AC2
SOFTWARE
SER A:459 , ARG A:460 , ILE A:461 , GLN A:468 , ARG A:469 , GLU A:470 , GLY A:471 , THR A:472 , GLY A:473 , ARG A:474 , SER A:493 , GLU A:499 , ARG A:502 , PHE A:503 , ARG A:506 , HOH A:875 , HOH A:887
BINDING SITE FOR RESIDUE ACO A 700
3
AC3
SOFTWARE
LYS B:301 , SER B:459 , ILE B:461 , ARG B:469 , GLU B:470 , GLY B:471 , THR B:472 , GLY B:473 , ARG B:474 , SER B:493 , PHE B:494 , LEU B:500 , PHE B:503 , ARG B:506 , HOH B:906 , HOH B:930
BINDING SITE FOR RESIDUE ACO B 701
4
AC4
SOFTWARE
ALA A:172 , GLY A:174 , ALA A:175 , PRO A:176 , GLN A:180 , ALA A:200 , GLY A:202 , ARG A:203 , GLY A:204 , LYS A:205 , SER A:206 , ALA A:207 , GLN A:211 , PHE A:236 , ILE A:318 , ARG A:319 , HOH A:856 , HOH A:908 , HOH A:968
BINDING SITE FOR RESIDUE ADP A 800
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GNAT (A:356-531,B:356-531)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GNAT
PS51186
Gcn5-related N-acetyltransferase (GNAT) domain profile.
TMCA_ECOLI
356-531
2
A:356-531
B:356-531
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_GNAT_acetyltr_2_2zpaB01 (B:368-534)
1b: PFAM_GNAT_acetyltr_2_2zpaB02 (B:368-534)
2a: PFAM_Helicase_RecD_2zpaB03 (B:196-337)
2b: PFAM_Helicase_RecD_2zpaB04 (B:196-337)
3a: PFAM_DUF1726_2zpaB05 (B:65-153)
3b: PFAM_DUF1726_2zpaB06 (B:65-153)
4a: PFAM_tRNA_bind_2_2zpaB07 (B:548-637)
4b: PFAM_tRNA_bind_2_2zpaB08 (B:548-637)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Acetyltrans
(109)
Family
:
GNAT_acetyltr_2
(1)
Escherichia coli (strain K12)
(1)
1a
GNAT_acetyltr_2-2zpaB01
B:368-534
1b
GNAT_acetyltr_2-2zpaB02
B:368-534
Clan
:
P-loop_NTPase
(1112)
Family
:
Helicase_RecD
(1)
Escherichia coli (strain K12)
(1)
2a
Helicase_RecD-2zpaB03
B:196-337
2b
Helicase_RecD-2zpaB04
B:196-337
Clan
:
no clan defined [family: DUF1726]
(1)
Family
:
DUF1726
(1)
Escherichia coli (strain K12)
(1)
3a
DUF1726-2zpaB05
B:65-153
3b
DUF1726-2zpaB06
B:65-153
Clan
:
no clan defined [family: tRNA_bind_2]
(1)
Family
:
tRNA_bind_2
(1)
Escherichia coli (strain K12)
(1)
4a
tRNA_bind_2-2zpaB07
B:548-637
4b
tRNA_bind_2-2zpaB08
B:548-637
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Asym.Unit (228 KB)
Header - Asym.Unit
Biol.Unit 1 (114 KB)
Header - Biol.Unit 1
Biol.Unit 2 (112 KB)
Header - Biol.Unit 2
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