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2ZO9
Biol. Unit 1
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Asym.Unit (96 KB)
Biol.Unit 1 (264 KB)
Biol.Unit 2 (90 KB)
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Title
:
MALONATE-BOUND STRUCTURE OF THE GLYCEROPHOSPHODIESTERASE FROM ENTEROBACTER AEROGENES (GPDQ) AND CHARACTERIZATION OF THE NATIVE FE2+ METAL ION PREFERENCE
Authors
:
C. J. Jackson, P. D. Carr, D. L. Ollis
Date
:
07 May 08 (Deposition) - 07 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : B,C
Biol. Unit 1: B,C (3x)
Biol. Unit 2: B,C (1x)
Keywords
:
Malonate, Metalloenzyme, Iron, Phosphodiesterase, Hydrolase
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Reference
:
C. J. Jackson, K. S. Hadler, P. D. Carr, A. J. Oakley, S. Yip, G. Schenk, D. L. Ollis
Malonate-Bound Structure Of The Glycerophosphodiesterase From Enterobacter Aerogenes (Gpdq) And Characterization Of The Native Fe2+ Metal-Ion Preference.
Acta Crystallogr. , Sect. F V. 64 681 2008
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1b: FE (II) ION (FE2b)
1c: FE (II) ION (FE2c)
1d: FE (II) ION (FE2d)
2a: MALONATE ION (MLIa)
2b: MALONATE ION (MLIb)
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No.
Name
Count
Type
Full Name
1
FE2
12
Ligand/Ion
FE (II) ION
2
MLI
6
Ligand/Ion
MALONATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:8 , HIS B:10 , ASP B:50 , HIS B:197
BINDING SITE FOR RESIDUE FE2 B 275
2
AC2
SOFTWARE
ASP B:50 , ASN B:80 , HIS B:156 , HIS B:195
BINDING SITE FOR RESIDUE FE2 B 276
3
AC3
SOFTWARE
ASP C:8 , HIS C:10 , ASP C:50 , HIS C:197
BINDING SITE FOR RESIDUE FE2 C 275
4
AC4
SOFTWARE
ASP C:50 , ASN C:80 , HIS C:156 , HIS C:195
BINDING SITE FOR RESIDUE FE2 C 276
5
AC5
SOFTWARE
ASP B:8 , HIS B:10 , ASP B:50 , ASN B:80 , HIS B:81 , HIS B:195 , HIS B:197
BINDING SITE FOR RESIDUE MLI B 277
6
AC6
SOFTWARE
ASP C:8 , HIS C:10 , ASP C:50 , ASN C:80 , HIS C:81 , ILE C:170 , HIS C:195 , HIS C:197
BINDING SITE FOR RESIDUE MLI C 277
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2zo9b1 (B:1-271)
1b: SCOP_d2zo9c_ (C:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
GpdQ-like
(8)
Protein domain
:
Glycerophosphodiesterase GpdQ
(5)
Enterobacter aerogenes [TaxId: 548]
(5)
1a
d2zo9b1
B:1-271
1b
d2zo9c_
C:
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Metallophos_2zo9C01 (C:1-199)
1b: PFAM_Metallophos_2zo9C02 (C:1-199)
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Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Enterobacter aerogenes (Aerobacter aerogenes)
(2)
1a
Metallophos-2zo9C01
C:1-199
1b
Metallophos-2zo9C02
C:1-199
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