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2ZNP
Asym. Unit
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Asym.Unit (94 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
HUMAN PPAR DELTA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST TIPP204
Authors
:
T. Oyama, Y. Hirakawa, N. Nagasawa, H. Miyachi, K. Morikawa
Date
:
30 Apr 08 (Deposition) - 05 May 09 (Release) - 02 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nuclear Receptor, Protein-Ligand Complex, Ppar, Activator, Dna- Binding, Metal-Binding, Nucleus, Receptor, Transcription, Transcription Regulation, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Oyama, K. Toyota, T. Waku, Y. Hirakawa, N. Nagasawa, J. Kasuga, Y. Hashimoto, H. Miyachi, K. Morikawa
Adaptability And Selectivity Of Human Peroxisome Proliferator-Activated Receptor (Ppar) Pan Agonists Reveale From Crystal Structures
Acta Crystallogr. , Sect. D V. 65 786 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: HEPTYL-BETA-D-GLUCOPYRANOSIDE (B7Ga)
1b: HEPTYL-BETA-D-GLUCOPYRANOSIDE (B7Gb)
2a: (2S)-2-{4-BUTOXY-3-[({[2-FLUORO-4-... (K55a)
2b: (2S)-2-{4-BUTOXY-3-[({[2-FLUORO-4-... (K55b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
B7G
2
Ligand/Ion
HEPTYL-BETA-D-GLUCOPYRANOSIDE
2
K55
2
Ligand/Ion
(2S)-2-{4-BUTOXY-3-[({[2-FLUORO-4-(TRIFLUOROMETHYL)PHENYL]CARBONYL}AMINO)METHYL]BENZYL}BUTANOIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:312 , THR B:297 , LEU B:318 , LYS B:319 , GLU B:471 , LYS B:474
BINDING SITE FOR RESIDUE B7G B 920
2
AC2
SOFTWARE
THR A:297 , LEU A:318 , LYS A:319 , GLU A:471 , ASN B:312 , THR B:316
BINDING SITE FOR RESIDUE B7G A 921
3
AC3
SOFTWARE
ARG A:284 , CYS A:285 , THR A:288 , THR A:289 , HIS A:323 , LEU A:330 , LEU A:339 , HIS A:449 , MET A:453 , TYR A:473
BINDING SITE FOR RESIDUE K55 A 922
4
AC4
SOFTWARE
TRP B:264 , PHE B:282 , ARG B:284 , CYS B:285 , THR B:288 , THR B:289 , HIS B:323 , LEU B:330 , LEU B:339 , LEU B:353 , LYS B:367 , HIS B:449 , LEU B:469 , TYR B:473
BINDING SITE FOR RESIDUE K55 B 923
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(3, 6)
Info
All Exons
Exon 1.7 (A:211-245 | B:205-245 (gaps))
Exon 1.8a (A:246-396 (gaps) | B:246-396 (gaps...)
Exon 1.9 (A:396-476 | B:396-475)
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8a
3: Boundary 1.8a/1.9
4: Boundary 1.9/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000360694
1a
ENSE00001407360
chr6:
35310335-35310458
124
PPARD_HUMAN
-
0
0
-
-
1.2
ENST00000360694
2
ENSE00001173010
chr6:
35314844-35314927
84
PPARD_HUMAN
-
0
0
-
-
1.4
ENST00000360694
4
ENSE00001159519
chr6:
35378764-35378994
231
PPARD_HUMAN
1-44
44
0
-
-
1.5
ENST00000360694
5
ENSE00001032078
chr6:
35387904-35388058
155
PPARD_HUMAN
44-95
52
0
-
-
1.6
ENST00000360694
6
ENSE00000747035
chr6:
35389597-35389735
139
PPARD_HUMAN
96-142
47
0
-
-
1.7
ENST00000360694
7
ENSE00000747037
chr6:
35391723-35391925
203
PPARD_HUMAN
142-209
68
2
A:211-245
B:205-245 (gaps)
35
41
1.8a
ENST00000360694
8a
ENSE00001324592
chr6:
35392106-35392556
451
PPARD_HUMAN
210-360
151
2
A:246-396 (gaps)
B:246-396 (gaps)
151
151
1.9
ENST00000360694
9
ENSE00001401034
chr6:
35393609-35395955
2347
PPARD_HUMAN
360-441
82
2
A:396-476
B:396-475
81
80
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2znpa_ (A:)
1b: SCOP_d2znpb_ (B:)
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)
Protein Domains
(
)
(
)
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(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator-activated receptor delta, PPAR-DELTA
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2znpa_
A:
1b
d2znpb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hormone_recep_2znpB01 (B:271-463)
1b: PFAM_Hormone_recep_2znpB02 (B:271-463)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-2znpB01
B:271-463
1b
Hormone_recep-2znpB02
B:271-463
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Asymmetric Unit 1
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