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2ZMN
Biol. Unit 5
Info
Asym.Unit (167 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (44 KB)
Biol.Unit 5 (44 KB)
Biol.Unit 6 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BASIC WINGED BEAN LECTIN IN COMPLEX WITH GAL-ALPHA- 1,6 GLC
Authors
:
K. A. Kulkarni, S. Katiyar, A. Surolia, M. Vijayan, K. Suguna
Date
:
19 Apr 08 (Deposition) - 29 Jul 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A (1x)
Biol. Unit 4: B (1x)
Biol. Unit 5: C (1x)
Biol. Unit 6: D (1x)
Keywords
:
Legume Lectins, Sugar Specificity, Winged Bean Lectin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. A. Kulkarni, S. Katiyar, A. Surolia, M. Vijayan, K. Suguna
Structure And Sugar-Specificity Of Basic Winged-Bean Lectin Structures Of New Disaccharide Complexes And A Comparative Study With Other Known Disaccharide Complexes Of The Lectin
Acta Crystallogr. , Sect. D V. 64 730 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 8)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
4a: ALPHA-L-FUCOSE (FUCa)
4b: ALPHA-L-FUCOSE (FUCb)
4c: ALPHA-L-FUCOSE (FUCc)
4d: ALPHA-L-FUCOSE (FUCd)
4e: ALPHA-L-FUCOSE (FUCe)
4f: ALPHA-L-FUCOSE (FUCf)
5a: ALPHA D-GALACTOSE (GLAa)
5b: ALPHA D-GALACTOSE (GLAb)
5c: ALPHA D-GALACTOSE (GLAc)
5d: ALPHA D-GALACTOSE (GLAd)
6a: MANGANESE (II) ION (MNa)
6b: MANGANESE (II) ION (MNb)
6c: MANGANESE (II) ION (MNc)
6d: MANGANESE (II) ION (MNd)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
5
GLA
1
Ligand/Ion
ALPHA D-GALACTOSE
6
MN
-1
Ligand/Ion
MANGANESE (II) ION
7
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(10, 10)
Info
All Sites
01: AD5 (SOFTWARE)
02: AD6 (SOFTWARE)
03: AD7 (SOFTWARE)
04: BC6 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC4 (SOFTWARE)
09: DC5 (SOFTWARE)
10: DC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AD5
SOFTWARE
NAG C:501 , NAG C:503
BINDING SITE FOR RESIDUE FUC C 502
02
AD6
SOFTWARE
NAG C:601
BINDING SITE FOR RESIDUE NAG C 603
03
AD7
SOFTWARE
HIS C:84 , ASP C:87 , GLY C:104 , GLY C:105 , PHE C:126 , ASN C:128 , ASP C:212 , BGC C:401
BINDING SITE FOR RESIDUE GLA C 400
04
BC6
SOFTWARE
PRO C:83 , GLN C:217 , ASN C:219 , FUC C:502 , NAG C:503
BINDING SITE FOR RESIDUE NAG C 501
05
BC8
SOFTWARE
SER B:181 , GLU B:200 , NAG C:501 , FUC C:502 , BMA C:504
BINDING SITE FOR RESIDUE NAG C 503
06
BC9
SOFTWARE
SER B:60 , THR B:61 , GLU B:200 , NAG C:503
BINDING SITE FOR RESIDUE BMA C 504
07
CC1
SOFTWARE
ARG C:21 , ASN C:44 , NAG C:603
BINDING SITE FOR RESIDUE NAG C 601
08
CC4
SOFTWARE
HIS C:84 , GLA C:400
BINDING SITE FOR RESIDUE BGC C 401
09
DC5
SOFTWARE
GLU C:122 , ASP C:124 , ASP C:131 , HIS C:136 , HOH C:604
BINDING SITE FOR RESIDUE MN C 300
10
DC6
SOFTWARE
ASP C:124 , PHE C:126 , ASN C:128 , ASP C:131 , HOH C:605 , HOH C:606
BINDING SITE FOR RESIDUE CA C 303
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (C:119-125)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LEC1_PSOTE
120-126
1
-
-
C:119-125
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2zmna_ (A:)
1b: SCOP_d2zmnb_ (B:)
1c: SCOP_d2zmnc_ (C:)
1d: SCOP_d2zmnd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]
(13)
1a
d2zmna_
A:
1b
d2zmnb_
B:
1c
d2zmnc_
C:
1d
d2zmnd_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2zmnA00 (A:1-237)
1b: CATH_2zmnC00 (C:1-237)
1c: CATH_2zmnD00 (D:1-237)
1d: CATH_2zmnB00 (B:1-237)
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Goa bean (Psophocarpus tetragonolobus)
(3)
1a
2zmnA00
A:1-237
1b
2zmnC00
C:1-237
1c
2zmnD00
D:1-237
1d
2zmnB00
B:1-237
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Lectin_legB_2zmnD01 (D:1-232)
1b: PFAM_Lectin_legB_2zmnD02 (D:1-232)
1c: PFAM_Lectin_legB_2zmnD03 (D:1-232)
1d: PFAM_Lectin_legB_2zmnD04 (D:1-232)
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Clans
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)
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(
)
Organisms
(
)
(
)
Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Psophocarpus tetragonolobus (Winged bean) (Dolichos tetragonolobus)
(5)
1a
Lectin_legB-2zmnD01
D:1-232
1b
Lectin_legB-2zmnD02
D:1-232
1c
Lectin_legB-2zmnD03
D:1-232
1d
Lectin_legB-2zmnD04
D:1-232
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (167 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (81 KB)
Header - Biol.Unit 2
Biol.Unit 3 (44 KB)
Header - Biol.Unit 3
Biol.Unit 4 (44 KB)
Header - Biol.Unit 4
Biol.Unit 5 (44 KB)
Header - Biol.Unit 5
Biol.Unit 6 (43 KB)
Header - Biol.Unit 6
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