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2ZML
Biol. Unit 6
Info
Asym.Unit (166 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (43 KB)
Biol.Unit 4 (44 KB)
Biol.Unit 5 (43 KB)
Biol.Unit 6 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BASIC WINGED BEAN LECTIN IN COMPLEX WITH GAL-ALPHA 1,4 GAL
Authors
:
K. A. Kulkarni, S. Katiyar, A. Surolia, M. Vijayan, K. Suguna
Date
:
19 Apr 08 (Deposition) - 29 Jul 08 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A (1x)
Biol. Unit 4: B (1x)
Biol. Unit 5: C (1x)
Biol. Unit 6: D (1x)
Keywords
:
Legume Lectin, Sugar Specificity, Winged Bean Lectin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. A. Kulkarni, S. Katiyar, A. Surolia, M. Vijayan, K. Suguna
Structure And Sugar-Specificity Of Basic Winged-Bean Lectin Structures Of New Disaccharide Complexes And A Comparative Study With Other Known Disaccharide Complexes Of The Lectin
Acta Crystallogr. , Sect. D V. 64 730 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
3a: ALPHA D-GALACTOSE (GLAa)
3b: ALPHA D-GALACTOSE (GLAb)
3c: ALPHA D-GALACTOSE (GLAc)
3d: ALPHA D-GALACTOSE (GLAd)
3e: ALPHA D-GALACTOSE (GLAe)
3f: ALPHA D-GALACTOSE (GLAf)
3g: ALPHA D-GALACTOSE (GLAg)
3h: ALPHA D-GALACTOSE (GLAh)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
4d: MANGANESE (II) ION (MNd)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
FUC
-1
Ligand/Ion
ALPHA-L-FUCOSE
3
GLA
2
Ligand/Ion
ALPHA D-GALACTOSE
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
5
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(8, 8)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC6 (SOFTWARE)
3: BC4 (SOFTWARE)
4: CC3 (SOFTWARE)
5: CC4 (SOFTWARE)
6: CC5 (SOFTWARE)
7: DC3 (SOFTWARE)
8: DC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASN D:8 , GLN D:9
BINDING SITE FOR RESIDUE FUC A 502
2
AC6
SOFTWARE
ASN A:44 , SER D:60
BINDING SITE FOR RESIDUE NAG A 601
3
BC4
SOFTWARE
LEU D:113 , SER D:114
BINDING SITE FOR RESIDUE FUC B 602
4
CC3
SOFTWARE
HIS D:84 , ASP D:87 , GLY D:104 , GLY D:105 , PHE D:126 , ASN D:128 , GLY D:211 , ASP D:212 , GLY D:215 , ALA D:220
BINDING SITE FOR RESIDUE GLA D 400
5
CC4
SOFTWARE
ARG D:82 , SER D:214
BINDING SITE FOR RESIDUE GLA D 401
6
CC5
SOFTWARE
ARG D:21 , ASN D:44
BINDING SITE FOR RESIDUE NAG D 601
7
DC3
SOFTWARE
GLU D:122 , ASP D:124 , ASP D:131 , HIS D:136
BINDING SITE FOR RESIDUE MN D 300
8
DC4
SOFTWARE
ASP D:124 , PHE D:126 , ASN D:128 , ASP D:131
BINDING SITE FOR RESIDUE CA D 303
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (D:119-125)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LEC1_PSOTE
120-126
1
-
-
-
D:119-125
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2zmla_ (A:)
1b: SCOP_d2zmlb_ (B:)
1c: SCOP_d2zmlc_ (C:)
1d: SCOP_d2zmld_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]
(13)
1a
d2zmla_
A:
1b
d2zmlb_
B:
1c
d2zmlc_
C:
1d
d2zmld_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2zmlA00 (A:1-237)
1b: CATH_2zmlB00 (B:1-237)
1c: CATH_2zmlC00 (C:1-237)
1d: CATH_2zmlD00 (D:1-237)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Goa bean (Psophocarpus tetragonolobus)
(3)
1a
2zmlA00
A:1-237
1b
2zmlB00
B:1-237
1c
2zmlC00
C:1-237
1d
2zmlD00
D:1-237
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Lectin_legB_2zmlD01 (D:1-232)
1b: PFAM_Lectin_legB_2zmlD02 (D:1-232)
1c: PFAM_Lectin_legB_2zmlD03 (D:1-232)
1d: PFAM_Lectin_legB_2zmlD04 (D:1-232)
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Psophocarpus tetragonolobus (Winged bean) (Dolichos tetragonolobus)
(5)
1a
Lectin_legB-2zmlD01
D:1-232
1b
Lectin_legB-2zmlD02
D:1-232
1c
Lectin_legB-2zmlD03
D:1-232
1d
Lectin_legB-2zmlD04
D:1-232
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Chain D
Asymmetric Unit 1
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Asym.Unit (166 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
Biol.Unit 3 (43 KB)
Header - Biol.Unit 3
Biol.Unit 4 (44 KB)
Header - Biol.Unit 4
Biol.Unit 5 (43 KB)
Header - Biol.Unit 5
Biol.Unit 6 (42 KB)
Header - Biol.Unit 6
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