PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2ZLW
Asym. Unit
Info
Asym.Unit (99 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HORSE METHEMOGLOBIN HIGH SALT, PH 7.0 (75% RELATIVE HUMIDITY)
Authors
:
P. S. Kaushal, R. Sankaranarayanan, M. Vijayan
Date
:
10 Apr 08 (Deposition) - 24 Jun 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Protein Hydration, Allosteric Transitions, Variability In Quaternary Structure, Solvent Content And Crystal Structure, Water-Mediated Transformation, Heme, Iron, Metal-Binding, Oxygen Transport, Polymorphism, Transport, Oxygen Storage
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Kaushal, R. Sankaranarayanan, M. Vijayan
Water-Mediated Variability In The Structure Of Relaxed-State Haemoglobin
Acta Crystallogr. , Sect. F V. 64 463 2008
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:42 , PHE A:43 , HIS A:45 , HIS A:58 , LYS A:61 , HIS A:87 , LEU A:91 , ASN A:97 , PHE A:98 , LEU A:101 , LEU A:136
BINDING SITE FOR RESIDUE HEM A 142
2
AC2
SOFTWARE
PHE B:41 , HIS B:63 , PHE B:71 , LEU B:91 , HIS B:92 , LEU B:96 , ASN B:102 , LEU B:106 , LEU B:141
BINDING SITE FOR RESIDUE HEM B 147
3
AC3
SOFTWARE
TYR C:42 , PHE C:43 , HIS C:45 , HIS C:58 , LYS C:61 , LEU C:86 , HIS C:87 , LEU C:91 , ASN C:97 , PHE C:98 , LEU C:101 , LEU C:136
BINDING SITE FOR RESIDUE HEM C 142
4
AC4
SOFTWARE
PHE D:41 , PHE D:42 , HIS D:63 , LEU D:88 , LEU D:91 , HIS D:92 , LEU D:96 , ASN D:102 , LEU D:106 , LEU D:141
BINDING SITE FOR RESIDUE HEM D 147
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_HBA_HORSE_001 (Y24F, chain A/C, )
2: VAR_HBA_HORSE_002 (K60Q, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_HBA_HORSE_001
*
Y
25
F
HBA_HORSE
---
---
A/C
Y
24
F
2
UniProt
VAR_HBA_HORSE_002
*
K
61
Q
HBA_HORSE
---
---
A/C
K
60
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (A:2-141,C:2-141,B:3-146,D:3-146)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBA_HORSE
3-142
2
A:2-141
C:2-141
HBB_HORSE
3-146
2
B:3-146
D:3-146
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2zlwa_ (A:)
1b: SCOP_d2zlwc_ (C:)
2a: SCOP_d2zlwb_ (B:)
2b: SCOP_d2zlwd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin, alpha-chain
(292)
Horse (Equus caballus) [TaxId: 9796]
(16)
1a
d2zlwa_
A:
1b
d2zlwc_
C:
Protein domain
:
Hemoglobin, beta-chain
(292)
Horse (Equus caballus) [TaxId: 9796]
(16)
2a
d2zlwb_
B:
2b
d2zlwd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2zlwB00 (B:1-146)
1b: CATH_2zlwD00 (D:1-146)
1c: CATH_2zlwA00 (A:1-141)
1d: CATH_2zlwC00 (C:1-141)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Horse (Equus caballus)
(63)
1a
2zlwB00
B:1-146
1b
2zlwD00
D:1-146
1c
2zlwA00
A:1-141
1d
2zlwC00
C:1-141
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Globin_2zlwC01 (C:6-106)
1b: PFAM_Globin_2zlwC02 (C:6-106)
1c: PFAM_Globin_2zlwD01 (D:7-111)
1d: PFAM_Globin_2zlwD02 (D:7-111)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Globin
(291)
Family
:
Globin
(264)
Equus caballus (Horse)
(45)
1a
Globin-2zlwC01
C:6-106
1b
Globin-2zlwC02
C:6-106
1c
Globin-2zlwD01
D:7-111
1d
Globin-2zlwD02
D:7-111
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (99 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2ZLW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
