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2ZLE
Biol. Unit 1
Info
Asym.Unit (771 KB)
Biol.Unit 1 (763 KB)
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(1)
Title
:
CRYO-EM STRUCTURE OF DEGP12/OMP
Authors
:
E. Schaefer, H. R. Saibil
Date
:
09 Apr 08 (Deposition) - 03 Jun 08 (Release) - 08 Feb 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
28.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M (1x)
Keywords
:
Degp, Htra, Protease, Chaperone, Pdz, Outer Membrane Protein, Omp, Periplasm, Hydrolase, Serine Protease, Stress Response, Ion Transport, Phage Recognition, Porin, Transmembrane, Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Krojer, J. Sawa, H. R. Saibil, M. Ehrmann, T. Clausen
Structural Basis For The Regulated Protease And Chaperone Function Of Degp
Nature V. 453 885 2008
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 25)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:209-300,B:605-696,C:1001-1092,E:...)
2: GRAM_NEG_PORIN (D:1486-1502)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
DEGP_ECOLI
280-371
377-466
24
A:209-300
B:605-696
C:1001-1092
E:1743-1834
F:2139-2230
G:2535-2626
H:2931-3022
I:3327-3418
J:3723-3814
K:4119-4210
L:4515-4606
M:4911-5002
A:306-390
B:702-786
C:1098-1182
E:1840-1924
F:2236-2320
G:2632-2716
H:3028-3112
I:3424-3508
J:3820-3904
K:4216-4300
L:4612-4696
M:5008-5092
2
GRAM_NEG_PORIN
PS00576
General diffusion Gram-negative porins signature.
OMPC_ECOLI
319-335
1
D:1486-1502
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 36)
Info
All SCOP Domains
1a: SCOP_d2zlea1 (A:215-313)
1b: SCOP_d2zlec1 (C:1007-1105)
1c: SCOP_d2zlec2 (C:1106-1188)
1d: SCOP_d2zlee1 (E:1749-1847)
1e: SCOP_d2zlee2 (E:1848-1930)
1f: SCOP_d2zlef1 (F:2145-2243)
1g: SCOP_d2zlef2 (F:2244-2326)
1h: SCOP_d2zleg1 (G:2541-2639)
1i: SCOP_d2zleg2 (G:2640-2722)
1j: SCOP_d2zleh1 (H:2937-3035)
1k: SCOP_d2zleh2 (H:3036-3118)
1l: SCOP_d2zlei1 (I:3333-3431)
1m: SCOP_d2zlei2 (I:3432-3514)
1n: SCOP_d2zlej1 (J:3729-3827)
1o: SCOP_d2zlej2 (J:3828-3910)
1p: SCOP_d2zlek1 (K:4125-4223)
1q: SCOP_d2zlek2 (K:4224-4306)
1r: SCOP_d2zlel1 (L:4521-4619)
1s: SCOP_d2zlel2 (L:4620-4702)
1t: SCOP_d2zlem1 (M:4917-5015)
1u: SCOP_d2zlem2 (M:5016-5098)
1v: SCOP_d2zlea2 (A:314-396)
1w: SCOP_d2zleb1 (B:611-709)
1x: SCOP_d2zleb2 (B:710-792)
2a: SCOP_d2zlea3 (A:1-214)
2b: SCOP_d2zleh3 (H:2723-2936)
2c: SCOP_d2zlei3 (I:3119-3332)
2d: SCOP_d2zlej3 (J:3515-3728)
2e: SCOP_d2zlek3 (K:3911-4124)
2f: SCOP_d2zlel3 (L:4307-4520)
2g: SCOP_d2zlem3 (M:4703-4916)
2h: SCOP_d2zleb3 (B:397-610)
2i: SCOP_d2zlec3 (C:793-1006)
2j: SCOP_d2zlee3 (E:1535-1748)
2k: SCOP_d2zlef3 (F:1931-2144)
2l: SCOP_d2zleg3 (G:2327-2540)
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(
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
HtrA-like serine proteases
(12)
Protein domain
:
Protease Do (DegP, HtrA), C-terminal domains
(4)
Escherichia coli [TaxId: 562]
(4)
1a
d2zlea1
A:215-313
1b
d2zlec1
C:1007-1105
1c
d2zlec2
C:1106-1188
1d
d2zlee1
E:1749-1847
1e
d2zlee2
E:1848-1930
1f
d2zlef1
F:2145-2243
1g
d2zlef2
F:2244-2326
1h
d2zleg1
G:2541-2639
1i
d2zleg2
G:2640-2722
1j
d2zleh1
H:2937-3035
1k
d2zleh2
H:3036-3118
1l
d2zlei1
I:3333-3431
1m
d2zlei2
I:3432-3514
1n
d2zlej1
J:3729-3827
1o
d2zlej2
J:3828-3910
1p
d2zlek1
K:4125-4223
1q
d2zlek2
K:4224-4306
1r
d2zlel1
L:4521-4619
1s
d2zlel2
L:4620-4702
1t
d2zlem1
M:4917-5015
1u
d2zlem2
M:5016-5098
1v
d2zlea2
A:314-396
1w
d2zleb1
B:611-709
1x
d2zleb2
B:710-792
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Prokaryotic proteases
(131)
Protein domain
:
Protease Do (DegP, HtrA), catalytic domain
(5)
Escherichia coli [TaxId: 562]
(4)
2a
d2zlea3
A:1-214
2b
d2zleh3
H:2723-2936
2c
d2zlei3
I:3119-3332
2d
d2zlej3
J:3515-3728
2e
d2zlek3
K:3911-4124
2f
d2zlel3
L:4307-4520
2g
d2zlem3
M:4703-4916
2h
d2zleb3
B:397-610
2i
d2zlec3
C:793-1006
2j
d2zlee3
E:1535-1748
2k
d2zlef3
F:1931-2144
2l
d2zleg3
G:2327-2540
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 37)
Info
all PFAM domains
1a: PFAM_Porin_1_2zleD01 (D:1194-1534)
2a: PFAM_PDZ_2zleM01 (M:5016-5089)
2b: PFAM_PDZ_2zleM02 (M:5016-5089)
2c: PFAM_PDZ_2zleM03 (M:5016-5089)
2d: PFAM_PDZ_2zleM04 (M:5016-5089)
2e: PFAM_PDZ_2zleM05 (M:5016-5089)
2f: PFAM_PDZ_2zleM06 (M:5016-5089)
2g: PFAM_PDZ_2zleM07 (M:5016-5089)
2h: PFAM_PDZ_2zleM08 (M:5016-5089)
2i: PFAM_PDZ_2zleM09 (M:5016-5089)
2j: PFAM_PDZ_2zleM10 (M:5016-5089)
2k: PFAM_PDZ_2zleM11 (M:5016-5089)
2l: PFAM_PDZ_2zleM12 (M:5016-5089)
2m: PFAM_PDZ_2zleM13 (M:5016-5089)
2n: PFAM_PDZ_2zleM14 (M:5016-5089)
2o: PFAM_PDZ_2zleM15 (M:5016-5089)
2p: PFAM_PDZ_2zleM16 (M:5016-5089)
2q: PFAM_PDZ_2zleM17 (M:5016-5089)
2r: PFAM_PDZ_2zleM18 (M:5016-5089)
2s: PFAM_PDZ_2zleM19 (M:5016-5089)
2t: PFAM_PDZ_2zleM20 (M:5016-5089)
2u: PFAM_PDZ_2zleM21 (M:5016-5089)
2v: PFAM_PDZ_2zleM22 (M:5016-5089)
2w: PFAM_PDZ_2zleM23 (M:5016-5089)
2x: PFAM_PDZ_2zleM24 (M:5016-5089)
3a: PFAM_Trypsin_2_2zleM25 (M:4753-4881)
3b: PFAM_Trypsin_2_2zleM26 (M:4753-4881)
3c: PFAM_Trypsin_2_2zleM27 (M:4753-4881)
3d: PFAM_Trypsin_2_2zleM28 (M:4753-4881)
3e: PFAM_Trypsin_2_2zleM29 (M:4753-4881)
3f: PFAM_Trypsin_2_2zleM30 (M:4753-4881)
3g: PFAM_Trypsin_2_2zleM31 (M:4753-4881)
3h: PFAM_Trypsin_2_2zleM32 (M:4753-4881)
3i: PFAM_Trypsin_2_2zleM33 (M:4753-4881)
3j: PFAM_Trypsin_2_2zleM34 (M:4753-4881)
3k: PFAM_Trypsin_2_2zleM35 (M:4753-4881)
3l: PFAM_Trypsin_2_2zleM36 (M:4753-4881)
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Clans
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)
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)
Families
(
)
(
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Organisms
(
)
(
)
Clan
:
MBB
(97)
Family
:
Porin_1
(16)
Escherichia coli (strain K12)
(10)
1a
Porin_1-2zleD01
D:1194-1534
Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Escherichia coli (strain K12)
(21)
2a
PDZ-2zleM01
M:5016-5089
2b
PDZ-2zleM02
M:5016-5089
2c
PDZ-2zleM03
M:5016-5089
2d
PDZ-2zleM04
M:5016-5089
2e
PDZ-2zleM05
M:5016-5089
2f
PDZ-2zleM06
M:5016-5089
2g
PDZ-2zleM07
M:5016-5089
2h
PDZ-2zleM08
M:5016-5089
2i
PDZ-2zleM09
M:5016-5089
2j
PDZ-2zleM10
M:5016-5089
2k
PDZ-2zleM11
M:5016-5089
2l
PDZ-2zleM12
M:5016-5089
2m
PDZ-2zleM13
M:5016-5089
2n
PDZ-2zleM14
M:5016-5089
2o
PDZ-2zleM15
M:5016-5089
2p
PDZ-2zleM16
M:5016-5089
2q
PDZ-2zleM17
M:5016-5089
2r
PDZ-2zleM18
M:5016-5089
2s
PDZ-2zleM19
M:5016-5089
2t
PDZ-2zleM20
M:5016-5089
2u
PDZ-2zleM21
M:5016-5089
2v
PDZ-2zleM22
M:5016-5089
2w
PDZ-2zleM23
M:5016-5089
2x
PDZ-2zleM24
M:5016-5089
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin_2
(18)
Escherichia coli (strain K12)
(6)
3a
Trypsin_2-2zleM25
M:4753-4881
3b
Trypsin_2-2zleM26
M:4753-4881
3c
Trypsin_2-2zleM27
M:4753-4881
3d
Trypsin_2-2zleM28
M:4753-4881
3e
Trypsin_2-2zleM29
M:4753-4881
3f
Trypsin_2-2zleM30
M:4753-4881
3g
Trypsin_2-2zleM31
M:4753-4881
3h
Trypsin_2-2zleM32
M:4753-4881
3i
Trypsin_2-2zleM33
M:4753-4881
3j
Trypsin_2-2zleM34
M:4753-4881
3k
Trypsin_2-2zleM35
M:4753-4881
3l
Trypsin_2-2zleM36
M:4753-4881
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