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2ZL8
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (220 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF COPPER AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS: SUBSTRATE SCHIFF-BASE INTERMEDIATE FORMED WITH ETHYLAMINE
Authors
:
T. Murakawa, T. Okajima
Date
:
03 Apr 08 (Deposition) - 05 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Copper, Amine Oxidase, Topaquinone, Tpq, Reaction Intermediate, Metal-Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Taki, T. Murakawa, T. Nakamoto, M. Uchida, H. Hayashi, K. Tanizawa, Y. Yamamoto, T. Okajima
Further Insight Into The Mechanism Of Stereoselective Proton Abstraction By Bacterial Copper Amine Oxidase
Biochemistry V. 47 7726 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: 3-[(3E)-3-(ETHYLIMINO)-4-HYDROXY-6... (ESBa)
2b: 3-[(3E)-3-(ETHYLIMINO)-4-HYDROXY-6... (ESBb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
2
Ligand/Ion
COPPER (II) ION
2
ESB
2
Mod. Amino Acid
3-[(3E)-3-(ETHYLIMINO)-4-HYDROXY-6-OXOCYCLOHEXA-1,4-DIEN-1-YL]-L-ALANINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:284 , TYR A:296 , THR A:378 , ILE A:379 , GLY A:380 , ASN A:381 , ASP A:383 , TYR A:384
BINDING SITE FOR RESIDUE ESB A 382
2
AC2
SOFTWARE
LEU B:137 , TYR B:284 , TYR B:296 , THR B:378 , ILE B:379 , GLY B:380 , ASN B:381 , ASP B:383 , TYR B:384 , PHE B:407 , HIS B:433
BINDING SITE FOR RESIDUE ESB B 382
3
AC3
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592
BINDING SITE FOR RESIDUE CU A 1001
4
AC4
SOFTWARE
HIS B:431 , HIS B:433 , HIS B:592
BINDING SITE FOR RESIDUE CU B 1001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384,B:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600,B:587-600)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
B:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
B:587-600
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2zl8a1 (A:212-628)
1b: SCOP_d2zl8b1 (B:212-628)
2a: SCOP_d2zl8a2 (A:9-96)
2b: SCOP_d2zl8a3 (A:97-211)
2c: SCOP_d2zl8b2 (B:9-96)
2d: SCOP_d2zl8b3 (B:97-211)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d2zl8a1
A:212-628
1b
d2zl8b1
B:212-628
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d2zl8a2
A:9-96
2b
d2zl8a3
A:97-211
2c
d2zl8b2
B:9-96
2d
d2zl8b3
B:97-211
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2zl8A02 (A:102-203)
1b: CATH_2zl8B02 (B:102-203)
1c: CATH_2zl8A01 (A:9-95)
1d: CATH_2zl8B01 (B:9-95)
2a: CATH_2zl8A03 (A:204-627)
2b: CATH_2zl8B03 (B:204-627)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
2zl8A02
A:102-203
1b
2zl8B02
B:102-203
1c
2zl8A01
A:9-95
1d
2zl8B01
B:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
2zl8A03
A:204-627
2b
2zl8B03
B:204-627
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN3_2zl8B01 (B:98-198)
1b: PFAM_Cu_amine_oxidN3_2zl8B02 (B:98-198)
2a: PFAM_Cu_amine_oxid_2zl8B03 (B:219-628)
2b: PFAM_Cu_amine_oxid_2zl8B04 (B:219-628)
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Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN3
(37)
Arthrobacter globiformis
(13)
1a
Cu_amine_oxidN3-2zl8B01
B:98-198
1b
Cu_amine_oxidN3-2zl8B02
B:98-198
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Arthrobacter globiformis
(13)
2a
Cu_amine_oxid-2zl8B03
B:219-628
2b
Cu_amine_oxid-2zl8B04
B:219-628
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Asym.Unit (224 KB)
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