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2ZL0
Asym. Unit
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Asym.Unit (386 KB)
Biol.Unit 1 (379 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H.PYLORI CLPP
Authors
:
D. Y. Kim, K. K. Kim
Date
:
02 Apr 08 (Deposition) - 22 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Serine Protease, Cytoplasm, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Y. Kim, K. K. Kim
The Structural Basis For The Activation And Peptide Recognition Of Bacterial Clpp
J. Mol. Biol. V. 379 760 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 28)
Info
All PROSITE Patterns/Profiles
1: CLP_PROTEASE_SER (A:91-102,B:91-102,C:91-102,D:91-10...)
2: CLP_PROTEASE_HIS (A:113-126,B:113-126,C:113-126,D:11...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLP_PROTEASE_SER
PS00381
Endopeptidase Clp serine active site.
CLPP_HELPY
91-102
14
A:91-102
B:91-102
C:91-102
D:91-102
E:91-102
F:91-102
G:91-102
H:91-102
I:91-102
J:91-102
K:91-102
L:91-102
M:91-102
N:91-102
2
CLP_PROTEASE_HIS
PS00382
Endopeptidase Clp histidine active site.
CLPP_HELPY
113-126
14
A:113-126
B:113-126
C:113-126
D:113-126
E:113-126
F:113-126
G:113-126
H:113-126
I:113-126
J:113-126
K:113-126
L:113-126
M:113-126
N:113-126
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 14)
Info
All SCOP Domains
1a: SCOP_d2zl0a_ (A:)
1b: SCOP_d2zl0b_ (B:)
1c: SCOP_d2zl0c_ (C:)
1d: SCOP_d2zl0d_ (D:)
1e: SCOP_d2zl0e_ (E:)
1f: SCOP_d2zl0f_ (F:)
1g: SCOP_d2zl0g_ (G:)
1h: SCOP_d2zl0h_ (H:)
1i: SCOP_d2zl0i_ (I:)
1j: SCOP_d2zl0j_ (J:)
1k: SCOP_d2zl0k_ (K:)
1l: SCOP_d2zl0l_ (L:)
1m: SCOP_d2zl0m_ (M:)
1n: SCOP_d2zl0n_ (N:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Clp protease, ClpP subunit
(31)
Protein domain
:
Clp protease, ClpP subunit
(15)
Helicobacter pylori [TaxId: 210]
(4)
1a
d2zl0a_
A:
1b
d2zl0b_
B:
1c
d2zl0c_
C:
1d
d2zl0d_
D:
1e
d2zl0e_
E:
1f
d2zl0f_
F:
1g
d2zl0g_
G:
1h
d2zl0h_
H:
1i
d2zl0i_
I:
1j
d2zl0j_
J:
1k
d2zl0k_
K:
1l
d2zl0l_
L:
1m
d2zl0m_
M:
1n
d2zl0n_
N:
[
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CATH Domains
(1, 14)
Info
all CATH domains
1a: CATH_2zl0A00 (A:20-192)
1b: CATH_2zl0B00 (B:20-192)
1c: CATH_2zl0C00 (C:20-192)
1d: CATH_2zl0D00 (D:20-192)
1e: CATH_2zl0E00 (E:20-192)
1f: CATH_2zl0F00 (F:20-192)
1g: CATH_2zl0G00 (G:20-192)
1h: CATH_2zl0H00 (H:20-192)
1i: CATH_2zl0I00 (I:20-192)
1j: CATH_2zl0J00 (J:20-192)
1k: CATH_2zl0K00 (K:20-192)
1l: CATH_2zl0L00 (L:20-192)
1m: CATH_2zl0M00 (M:20-192)
1n: CATH_2zl0N00 (N:20-192)
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Helicobacter pylori. Organism_taxid: 210.
(4)
1a
2zl0A00
A:20-192
1b
2zl0B00
B:20-192
1c
2zl0C00
C:20-192
1d
2zl0D00
D:20-192
1e
2zl0E00
E:20-192
1f
2zl0F00
F:20-192
1g
2zl0G00
G:20-192
1h
2zl0H00
H:20-192
1i
2zl0I00
I:20-192
1j
2zl0J00
J:20-192
1k
2zl0K00
K:20-192
1l
2zl0L00
L:20-192
1m
2zl0M00
M:20-192
1n
2zl0N00
N:20-192
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Pfam Domains
(1, 14)
Info
all PFAM domains
1a: PFAM_CLP_protease_2zl0N01 (N:20-192)
1b: PFAM_CLP_protease_2zl0N02 (N:20-192)
1c: PFAM_CLP_protease_2zl0N03 (N:20-192)
1d: PFAM_CLP_protease_2zl0N04 (N:20-192)
1e: PFAM_CLP_protease_2zl0N05 (N:20-192)
1f: PFAM_CLP_protease_2zl0N06 (N:20-192)
1g: PFAM_CLP_protease_2zl0N07 (N:20-192)
1h: PFAM_CLP_protease_2zl0N08 (N:20-192)
1i: PFAM_CLP_protease_2zl0N09 (N:20-192)
1j: PFAM_CLP_protease_2zl0N10 (N:20-192)
1k: PFAM_CLP_protease_2zl0N11 (N:20-192)
1l: PFAM_CLP_protease_2zl0N12 (N:20-192)
1m: PFAM_CLP_protease_2zl0N13 (N:20-192)
1n: PFAM_CLP_protease_2zl0N14 (N:20-192)
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Clans
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)
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)
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)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
CLP_protease
(18)
Helicobacter pylori (Campylobacter pylori)
(4)
1a
CLP_protease-2zl0N01
N:20-192
1b
CLP_protease-2zl0N02
N:20-192
1c
CLP_protease-2zl0N03
N:20-192
1d
CLP_protease-2zl0N04
N:20-192
1e
CLP_protease-2zl0N05
N:20-192
1f
CLP_protease-2zl0N06
N:20-192
1g
CLP_protease-2zl0N07
N:20-192
1h
CLP_protease-2zl0N08
N:20-192
1i
CLP_protease-2zl0N09
N:20-192
1j
CLP_protease-2zl0N10
N:20-192
1k
CLP_protease-2zl0N11
N:20-192
1l
CLP_protease-2zl0N12
N:20-192
1m
CLP_protease-2zl0N13
N:20-192
1n
CLP_protease-2zl0N14
N:20-192
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