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2ZIZ
Asym. Unit
Info
Asym.Unit (333 KB)
Biol.Unit 1 (325 KB)
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Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE IN TERNARY COMPLEX WITH NAD AND 3-DEAZAADENOSINE
Authors
:
M. C. M. Reddy, K. Gokulan, N. D. Shetty, J. L. Owen, T. R. Ioerger, J. C. Sa
Date
:
29 Feb 08 (Deposition) - 16 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Protein-Substrate Complex, Dimer Of Dimers, Nad Binding Domain, 37 Amino Acid Insertional Region, Hydrolase, One-Carbon Metabolism
(Keyword Search:
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Reference
:
M. C. Reddy, G. Kuppan, N. D. Shetty, J. L. Owen, T. R. Ioerger, J. C. Sacchettini
Crystal Structures Of Mycobacterium Tuberculosis S-Adenosyl-L-Homocysteine Hydrolase In Ternary Complex With Substrate And Inhibitors.
Protein Sci. V. 17 2134 2008
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 3-DEAZA-ADENOSINE (AD3a)
1b: 3-DEAZA-ADENOSINE (AD3b)
1c: 3-DEAZA-ADENOSINE (AD3c)
1d: 3-DEAZA-ADENOSINE (AD3d)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AD3
4
Ligand/Ion
3-DEAZA-ADENOSINE
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:68 , HIS A:69 , THR A:71 , GLN A:73 , THR A:74 , ASP A:156 , GLU A:218 , THR A:219 , LYS A:248 , ASP A:252 , HIS A:363 , THR A:414 , GLY A:415 , HIS A:416 , PHE A:425
BINDING SITE FOR RESIDUE AD3 A 500
2
AC2
SOFTWARE
THR C:219 , THR C:220 , THR C:221 , ASN C:253 , GLY C:284 , ASP C:285 , THR C:304 , GLU C:305 , ILE C:306 , ASP C:307 , ASN C:310 , THR C:338 , GLY C:339 , ASN C:340 , ILE C:343 , ILE C:361 , GLY C:362 , HIS C:363 , ASN C:409 , HIS C:416 , LYS D:489 , TYR D:493
BINDING SITE FOR RESIDUE NAD C 550
3
AC3
SOFTWARE
HIS B:69 , THR B:71 , GLN B:73 , THR B:74 , ASP B:156 , GLU B:218 , THR B:219 , LYS B:248 , ASP B:252 , HIS B:363 , LEU B:407 , THR B:414 , HIS B:416
BINDING SITE FOR RESIDUE AD3 B 500
4
AC4
SOFTWARE
GLN C:476 , LYS C:489 , TYR C:493 , THR D:219 , THR D:220 , THR D:221 , ASN D:253 , GLY D:284 , ASP D:285 , THR D:304 , GLU D:305 , ILE D:306 , ASP D:307 , ASN D:310 , THR D:338 , GLY D:339 , ASN D:340 , ILE D:343 , ILE D:361 , GLY D:362 , HIS D:363 , LEU D:407 , ASN D:409 , HIS D:416
BINDING SITE FOR RESIDUE NAD D 550
5
AC5
SOFTWARE
LEU C:68 , HIS C:69 , THR C:71 , GLN C:73 , THR C:74 , ASP C:156 , GLU C:218 , THR C:219 , LYS C:248 , ASP C:252 , HIS C:363 , THR C:414 , GLY C:415 , HIS C:416 , MET C:421 , PHE C:425
BINDING SITE FOR RESIDUE AD3 C 500
6
AC6
SOFTWARE
THR A:219 , THR A:220 , THR A:221 , ASP A:252 , ASN A:253 , GLY A:284 , ASP A:285 , THR A:304 , GLU A:305 , ILE A:306 , ASP A:307 , ASN A:310 , THR A:338 , GLY A:339 , ASN A:340 , ILE A:343 , ILE A:361 , GLY A:362 , HIS A:363 , ASN A:409 , HIS A:416 , LEU B:480 , LYS B:489 , TYR B:493
BINDING SITE FOR RESIDUE NAD A 550
7
AC7
SOFTWARE
LEU D:68 , HIS D:69 , THR D:71 , GLN D:73 , THR D:74 , ASP D:156 , GLU D:218 , THR D:219 , LYS D:248 , ASP D:252 , HIS D:363 , LEU D:410 , THR D:414 , GLY D:415 , HIS D:416 , MET D:421 , PHE D:425
BINDING SITE FOR RESIDUE AD3 D 500
8
AC8
SOFTWARE
LYS A:489 , TYR A:493 , THR B:219 , THR B:220 , THR B:221 , ASP B:252 , ASN B:253 , GLY B:284 , ASP B:285 , THR B:304 , GLU B:305 , ILE B:306 , ASP B:307 , ASN B:310 , THR B:338 , GLY B:339 , ASN B:340 , ILE B:343 , ILE B:361 , GLY B:362 , HIS B:363 , ASN B:409 , HIS B:416
BINDING SITE FOR RESIDUE NAD B 550
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ADOHCYASE_1 (A:92-106,B:92-106,C:92-106,D:92-10...)
2: ADOHCYASE_2 (A:275-291,B:275-291,C:275-291,D:27...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADOHCYASE_1
PS00738
S-adenosyl-L-homocysteine hydrolase signature 1.
SAHH_MYCTO
92-106
4
A:92-106
B:92-106
C:92-106
D:92-106
SAHH_MYCTU
92-106
4
A:92-106
B:92-106
C:92-106
D:92-106
2
ADOHCYASE_2
PS00739
S-adenosyl-L-homocysteine hydrolase signature 2.
SAHH_MYCTO
275-291
4
A:275-291
B:275-291
C:275-291
D:275-291
SAHH_MYCTU
275-291
4
A:275-291
B:275-291
C:275-291
D:275-291
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_AdoHcyase_2zizD01 (D:19-494)
1b: PFAM_AdoHcyase_2zizD02 (D:19-494)
1c: PFAM_AdoHcyase_2zizD03 (D:19-494)
1d: PFAM_AdoHcyase_2zizD04 (D:19-494)
2a: PFAM_AdoHcyase_NAD_2zizD05 (D:253-415)
2b: PFAM_AdoHcyase_NAD_2zizD06 (D:253-415)
2c: PFAM_AdoHcyase_NAD_2zizD07 (D:253-415)
2d: PFAM_AdoHcyase_NAD_2zizD08 (D:253-415)
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Clans
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Organisms
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)
(
)
Clan
:
Form_Glyc_dh
(56)
Family
:
AdoHcyase
(11)
Mycobacterium tuberculosis
(3)
1a
AdoHcyase-2zizD01
D:19-494
1b
AdoHcyase-2zizD02
D:19-494
1c
AdoHcyase-2zizD03
D:19-494
1d
AdoHcyase-2zizD04
D:19-494
Clan
:
NADP_Rossmann
(1239)
Family
:
AdoHcyase_NAD
(11)
Mycobacterium tuberculosis
(3)
2a
AdoHcyase_NAD-2zizD05
D:253-415
2b
AdoHcyase_NAD-2zizD06
D:253-415
2c
AdoHcyase_NAD-2zizD07
D:253-415
2d
AdoHcyase_NAD-2zizD08
D:253-415
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