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2ZHP
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BLEOMYCIN-BINDING PROTEIN FROM STREPTOALLOTEICHUS HINDUSTANUS COMPLEXED WITH BLEOMYCIN DERIVATIVE
Authors
:
H. Okumura, I. Miyazaki, S. Simizu, H. Osada
Date
:
06 Feb 08 (Deposition) - 17 Feb 09 (Release) - 17 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Antibiotic Resistance, Bleomycin, Ligand Binding Protein, Antibiotic Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Miyazaki, H. Okumura, S. Simizu, Y. Takahashi, N. Kanoh, Y. Nonomura, H. Osada
Structure-Affinity Relationship Study Of Bleomycins And Shble Protein Using A Chemical Array
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: [(2S,3R,4R,5S,6S)-2-[(3R,4R,5R,6R)... (BY6a)
1b: [(2S,3R,4R,5S,6S)-2-[(3R,4R,5R,6R)... (BY6b)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
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No.
Name
Count
Type
Full Name
1
BY6
2
Ligand/Ion
[(2S,3R,4R,5S,6S)-2-[(3R,4R,5R,6R)-2-[(1R,2S)-2-[[6-AMINO-2-[(1S)-3-AMINO-1-[(2,3-DIAMINO-3-OXOPROPYL)AMINO]-3-OXOPROPYL]-5-METHYLPYRIMIDINE-4-CARBONYL]AMINO]-3-[[(2S,3R,4R)-5-[[(2R,3S)-1-[2-[4-[4-[3-[4-(3-AMINOPROPYLAMINO)BUTYLAMINO]PROPYLCARBAMOYL]-1,3-THIAZOL-2-YL]-1,3-THIAZOL-2-YL]ETHYLAMINO]-3-HYDROXY-1-OXOBUTAN-2-YL]AMINO]-3-HYDROXY-4-METHYL-5-OXOPENTAN-2-YL]AMINO]-1-(3H-IMIDAZOL-4-YL)-3-OXOPROPOXY]-4,5-DIHYDROXY-6-(HYDROXYMETHYL)OXAN-3-YL]OXY-3,5-DIHYDROXY-6-(HYDROXYMETHYL)OXAN-4-YL]CARBAMATE
2
CL
3
Ligand/Ion
CHLORIDE ION
3
CU
2
Ligand/Ion
COPPER (II) ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:14 , ASP A:36 , ASP A:37 , ALA A:52 , GLN A:54 , PRO A:59 , ASP A:60 , ASN A:61 , THR A:62 , LEU A:63 , TRP A:65 , PHE A:86 , ARG A:87 , TRP A:102 , ALA A:107 , ARG A:109 , GLY A:113 , CYS A:115 , HIS A:117 , CU A:302 , CL A:303 , HOH A:508 , HOH A:518 , HOH A:520 , HOH A:533 , HOH A:548 , HOH A:549 , HOH A:559 , HOH A:566 , HOH A:569 , HOH A:578 , HOH A:579 , HOH A:595 , HOH A:642 , PHE B:33 , GLU B:35 , PHE B:38 , PHE B:49 , SER B:51 , ALA B:52 , VAL B:53 , HOH B:574 , HOH B:606
BINDING SITE FOR RESIDUE BY6 A 301
2
AC2
SOFTWARE
BY6 A:301
BINDING SITE FOR RESIDUE CU A 302
3
AC3
SOFTWARE
LEU A:63 , HIS A:117 , BY6 A:301
BINDING SITE FOR RESIDUE CL A 303
4
AC4
SOFTWARE
PHE A:33 , GLU A:35 , PHE A:38 , ALA A:52 , VAL A:53 , ARG A:87 , HOH A:614 , HOH A:630 , PRO B:59 , ASP B:60 , ASN B:61 , THR B:62 , LEU B:63 , TRP B:65 , ALA B:107 , ARG B:109 , GLY B:113 , CYS B:115 , HIS B:117 , CU B:402 , CL B:403 , HOH B:555 , HOH B:584 , HOH B:638 , HOH B:693 , HOH B:694 , HOH B:695 , HOH B:699
BINDING SITE FOR RESIDUE BY6 B 401
5
AC5
SOFTWARE
BY6 B:401 , CL B:403
BINDING SITE FOR RESIDUE CU B 402
6
AC6
SOFTWARE
BY6 B:401 , CU B:402
BINDING SITE FOR RESIDUE CL B 403
7
AC7
SOFTWARE
ALA A:2 , GLU B:21 , ASP B:25 , GLU B:73
BINDING SITE FOR RESIDUE CL B 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: VOC (A:3-121,B:3-121)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VOC
PS51819
Vicinal oxygen chelate (VOC) domain profile.
BLE_STRHI
3-121
2
A:3-121
B:3-121
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2zhpa_ (A:)
1b: SCOP_d2zhpb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Antibiotic resistance proteins
(31)
Protein domain
:
automated matches
(10)
Streptoalloteichus hindustanus [TaxId: 2017]
(1)
1a
d2zhpa_
A:
1b
d2zhpb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2zhpA00 (A:2-121)
1b: CATH_2zhpB00 (B:2-121)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Streptoalloteichus hindustanus. Organism_taxid: 2017.
(1)
1a
2zhpA00
A:2-121
1b
2zhpB00
B:2-121
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (52 KB)
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Header - Biol.Unit 1
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