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2ZD9
Asym. Unit
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Asym.Unit (143 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
STRUCTURE OF A BACTERIAL CYCLIC-NUCLEOTIDE REGULATED ION CHANNEL
Authors
:
G. M. Clayton, J. M. Cabral-Morais
Date
:
21 Nov 07 (Deposition) - 02 Dec 08 (Release) - 06 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transmembrane Protein, Membrane Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. M. Clayton, S. Altieri, L. Heginbotham, V. M. Unger, J. H. Morais-Cabral
Structure Of The Transmembrane Regions Of A Bacterial Cycli Nucleotide-Regulated Channel.
Proc. Natl. Acad. Sci. Usa V. 105 1511 2008
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
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No.
Name
Count
Type
Full Name
1
K
5
Ligand/Ion
POTASSIUM ION
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:177 , TYR A:178 , K A:357 , GLY B:177 , TYR B:178 , TYR C:178 , TYR D:178
BINDING SITE FOR RESIDUE K A 356
2
AC2
SOFTWARE
THR A:175 , THR B:175 , THR C:175 , THR D:175
BINDING SITE FOR RESIDUE K C 356
3
AC3
SOFTWARE
THR A:176 , GLY A:177 , K A:356 , THR B:176 , GLY B:177 , THR C:176 , GLY C:177 , K C:357 , THR D:176 , GLY D:177
BINDING SITE FOR RESIDUE K A 357
4
AC4
SOFTWARE
THR A:175 , THR A:176 , K A:357 , THR B:175 , THR B:176 , THR C:175 , THR C:176 , THR D:175 , THR D:176
BINDING SITE FOR RESIDUE K C 357
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (B:235-239,C:235-239)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
CNGK1_RHILO
235-348
2
B:235-239
C:235-239
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2zd9D02 (D:126-231)
1b: CATH_2zd9A02 (A:126-233)
1c: CATH_2zd9B02 (B:126-239)
1d: CATH_2zd9C02 (C:126-239)
2a: CATH_2zd9D01 (D:7-125)
2b: CATH_2zd9C01 (C:6-125)
2c: CATH_2zd9B01 (B:9-125)
2d: CATH_2zd9A01 (A:11-125)
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Organisms
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.70, no name defined]
(106)
Mesorhizobium loti (Rhizobium loti)
(1)
1a
2zd9D02
D:126-231
1b
2zd9A02
A:126-233
1c
2zd9B02
B:126-239
1d
2zd9C02
C:126-239
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
Voltage-gated potassium channels
(2)
Mesorhizobium loti (Rhizobium loti)
(1)
2a
2zd9D01
D:7-125
2b
2zd9C01
C:6-125
2c
2zd9B01
B:9-125
2d
2zd9A01
A:11-125
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Ion_trans_2_2zd9D01 (D:133-216)
1b: PFAM_Ion_trans_2_2zd9D02 (D:133-216)
1c: PFAM_Ion_trans_2_2zd9D03 (D:133-216)
1d: PFAM_Ion_trans_2_2zd9D04 (D:133-216)
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Clan
:
Ion_channel
(150)
Family
:
Ion_trans_2
(35)
Rhizobium loti (Mesorhizobium loti)
(1)
1a
Ion_trans_2-2zd9D01
D:133-216
1b
Ion_trans_2-2zd9D02
D:133-216
1c
Ion_trans_2-2zd9D03
D:133-216
1d
Ion_trans_2-2zd9D04
D:133-216
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Asymmetric Unit 1
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Asym.Unit (143 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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