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2ZBJ
Biol. Unit 1
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Asym.Unit (44 KB)
Biol.Unit 1 (151 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIOCLEA ROSTRATA LECTIN
Authors
:
T. M. De Oliveira, P. Delatorre, B. A. M. Da Rocha, E. P. De Sousa, K. S. Nascimento, G. A. Bezerra, T. R. Moura, R. G. Benevides, E. H. S. Bezerra, F. B. M. B. Moreno, V. N. Freire, W. F. De Azevedo Jr. , B. S. Cavada
Date
:
22 Oct 07 (Deposition) - 19 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Leguminosae, Lectin, Diocleinae, Dioclea Rostrata, Calcium, Manganese, Metal-Binding, Vacuole, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. M. De Oliveira, P. Delatorre, B. A. M. Da Rocha, E. P. De Souza, K. S. Nascimento, G. A. Bezerra, T. R. Moura, R. G. Benevides, E. H. S. Bezerra, F. B. M. B. Moreno, V. N. Freire, W. F. De Azevedo Jr. , B. S. Cavada
Crystal Structure Of Dioclea Rostrata Lectin: Insights Into Understanding The Ph-Dependent Dimer-Tetramer Equilibrium And The Structural Basis For Carbohydrate Recognition In Diocleinae Lectins
J. Struct. Biol. V. 164 177 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: MANGANESE (II) ION (MNa)
3a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:14 , SER A:71 , GLY A:98 , ASP A:208 , GLY A:227 , ARG A:228
BINDING SITE FOR RESIDUE PO4 A1285
2
AC2
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:352 , HOH A:353
BINDING SITE FOR RESIDUE MN A 238
3
AC3
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:323 , HOH A:333
BINDING SITE FOR RESIDUE CA A 239
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 8)
Info
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1: LECTIN_LEGUME_BETA (A:5-11)
2: LECTIN_LEGUME_ALPHA (A:85-94)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LECA_DIORO
5-11
4
A:5-11
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LECA_DIORO
85-94
4
A:85-94
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Exons
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SCOP Domains
(1, 1)
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1a: SCOP_d2zbja_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
automated matches
(63)
Dioclea rostrata [TaxId: 192416]
(1)
1a
d2zbja_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2zbjA00 (A:1-237)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Dioclea rostrata. Organism_taxid: 192416.
(1)
1a
2zbjA00
A:1-237
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lectin_legB_2zbjA01 (A:124-237)
1b: PFAM_Lectin_legB_2zbjA02 (A:124-237)
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Clan
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Concanavalin
(293)
Family
:
Lectin_legB
(93)
Dioclea rostrata
(1)
1a
Lectin_legB-2zbjA01
A:124-237
1b
Lectin_legB-2zbjA02
A:124-237
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Asym.Unit (44 KB)
Header - Asym.Unit
Biol.Unit 1 (151 KB)
Header - Biol.Unit 1
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