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2ZBE
Asym. Unit
Info
Asym.Unit (309 KB)
Biol.Unit 1 (154 KB)
Biol.Unit 2 (155 KB)
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(1)
Title
:
CALCIUM PUMP CRYSTAL STRUCTURE WITH BOUND BEF3 IN THE ABSENCE OF CALCIUM AND TG
Authors
:
C. Toyoshima, H. Ogawa, Y. Norimatsu
Date
:
20 Oct 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Membrane Protein, P-Type Atpase, Had Fold, Alternative Splicing, Atp-Binding, Calcium, Calcium Transport, Endoplasmic Reticulum, Hydrolase, Ion Transport, Magnesium, Metal-Binding, Nucleotide-Binding, Phosphorylation, Sarcoplasmic Reticulum, Transmembrane, Transport
(Keyword Search:
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]
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Reference
:
C. Toyoshima, Y. Norimatsu, S. Iwasawa, T. Tsuda, H. Ogawa
How Processing Of Aspartylphosphate Is Coupled To Lumenal Gating Of The Ion Pathway In The Calcium Pump
Proc. Natl. Acad. Sci. Usa V. 104 19831 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: BERYLLIUM TRIFLUORIDE ION (BEFa)
2b: BERYLLIUM TRIFLUORIDE ION (BEFb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
BEF
2
Ligand/Ion
BERYLLIUM TRIFLUORIDE ION
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:351 , THR A:353 , ASP A:703 , ASP A:707 , BEF A:998
BINDING SITE FOR RESIDUE MG A 997
2
AC2
SOFTWARE
ASP B:351 , THR B:353 , ASP B:703 , BEF B:1098
BINDING SITE FOR RESIDUE MG B 997
3
AC3
SOFTWARE
GLY A:182 , ASP A:351 , LYS A:352 , THR A:353 , ILE A:624 , THR A:625 , GLY A:626 , LYS A:684 , ASN A:706 , MG A:997
BINDING SITE FOR RESIDUE BEF A 998
4
AC4
SOFTWARE
GLY B:182 , ASP B:351 , LYS B:352 , THR B:353 , THR B:625 , GLY B:626 , LYS B:684 , ASN B:706 , MG B:997
BINDING SITE FOR RESIDUE BEF B 1098
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ATPASE_E1_E2 (A:351-357,B:351-357)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_E1_E2
PS00154
E1-E2 ATPases phosphorylation site.
AT2A1_RABIT
351-357
2
A:351-357
B:351-357
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d2zbea1 (A:125-239)
1b: SCOP_d2zbeb1 (B:125-239)
2a: SCOP_d2zbea3 (A:361-599)
2b: SCOP_d2zbeb3 (B:361-599)
3a: SCOP_d2zbea2 (A:344-360,A:600-750)
3b: SCOP_d2zbeb2 (B:344-360,B:600-750)
4a: SCOP_d2zbea4 (A:1-124,A:240-343,A:751-994)
4b: SCOP_d2zbeb4 (B:1-124,B:240-343,B:751-994)
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Classes
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)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Calcium ATPase, transduction domain A
(37)
Family
:
Calcium ATPase, transduction domain A
(37)
Protein domain
:
Calcium ATPase, transduction domain A
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
1a
d2zbea1
A:125-239
1b
d2zbeb1
B:125-239
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Superfamily
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Family
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Protein domain
:
Calcium ATPase
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
2a
d2zbea3
A:361-599
2b
d2zbeb3
B:361-599
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
Meta-cation ATPase, catalytic domain P
(38)
Protein domain
:
Calcium ATPase, catalytic domain P
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
3a
d2zbea2
A:344-360,A:600-750
3b
d2zbeb2
B:344-360,B:600-750
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Calcium ATPase, transmembrane domain M
(37)
Superfamily
:
Calcium ATPase, transmembrane domain M
(37)
Family
:
Calcium ATPase, transmembrane domain M
(37)
Protein domain
:
Calcium ATPase, transmembrane domain M
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
4a
d2zbea4
A:1-124,A:240-343,A:751-994
4b
d2zbeb4
B:1-124,B:240-343,B:751-994
[
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_2zbeA04 (A:359-602)
1b: CATH_2zbeB04 (B:359-602)
2a: CATH_2zbeA03 (A:346-358,A:603-738)
2b: CATH_2zbeB03 (B:346-358,B:603-738)
3a: CATH_2zbeA02 (A:49-112,A:244-345,A:739-994)
3b: CATH_2zbeB02 (B:49-112,B:244-345,B:739-994)
4a: CATH_2zbeA01 (A:1-48,A:113-243)
4b: CATH_2zbeB01 (B:1-48,B:113-243)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Rabbit (Oryctolagus cuniculus)
(31)
1a
2zbeA04
A:359-602
1b
2zbeB04
B:359-602
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Rabbit (Oryctolagus cuniculus)
(31)
2a
2zbeA03
A:346-358,A:603-738
2b
2zbeB03
B:346-358,B:603-738
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Calcium-transporting ATPase, transmembrane domain
(36)
Homologous Superfamily
:
Calcium-transporting ATPase, transmembrane domain
(36)
Rabbit (Oryctolagus cuniculus)
(31)
3a
2zbeA02
A:49-112,A:244-345,A:739-994
3b
2zbeB02
B:49-112,B:244-345,B:739-994
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Rabbit (Oryctolagus cuniculus)
(31)
4a
2zbeA01
A:1-48,A:113-243
4b
2zbeB01
B:1-48,B:113-243
[
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (309 KB)
Header - Asym.Unit
Biol.Unit 1 (154 KB)
Header - Biol.Unit 1
Biol.Unit 2 (155 KB)
Header - Biol.Unit 2
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