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2ZAE
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROTEIN PH1601P IN COMPLEX WITH PROTEIN PH1771P OF ARCHAEAL RIBONUCLEASE P FROM PYROCOCCUS HORIKOSHII OT3
Authors
:
T. Honda, Y. Kakuta, M. Kimura
Date
:
04 Oct 07 (Deposition) - 14 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.21
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ribonuclease P Protein Subunits, Hetero Dimer, Hydrolase, Trna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Honda, Y. Kakuta, K. Kimura, J. Saho, M. Kimura
Structure Of An Archaeal Homolog Of The Human Protein Complex Rpp21-Rpp29 That Is A Key Core Component For The Assembly Of Active Ribonuclease P.
J. Mol. Biol. V. 384 652 2008
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: NITRATE ION (NO3a)
2b: NITRATE ION (NO3b)
2c: NITRATE ION (NO3c)
2d: NITRATE ION (NO3d)
2e: NITRATE ION (NO3e)
2f: NITRATE ION (NO3f)
2g: NITRATE ION (NO3g)
2h: NITRATE ION (NO3h)
2i: NITRATE ION (NO3i)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
NO3
9
Ligand/Ion
NITRATE ION
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS B:68 , CYS B:71 , CYS B:97 , CYS B:100
BINDING SITE FOR RESIDUE ZN B 121
02
AC2
SOFTWARE
CYS D:68 , CYS D:71 , CYS D:97 , CYS D:100
BINDING SITE FOR RESIDUE ZN D 121
03
AC3
SOFTWARE
GLY A:25 , ARG A:26 , THR A:27 , TRP A:28 , HOH A:176 , TRP C:28
BINDING SITE FOR RESIDUE NO3 A 128
04
AC4
SOFTWARE
PRO B:77 , ARG D:82
BINDING SITE FOR RESIDUE NO3 D 122
05
AC5
SOFTWARE
ARG C:54 , GLY C:65 , GLU C:67 , HOH C:161 , MET D:90 , PRO D:91 , HIS D:92 , HOH D:148
BINDING SITE FOR RESIDUE NO3 D 123
06
AC6
SOFTWARE
ARG B:89 , GLN C:17 , SER C:19
BINDING SITE FOR RESIDUE NO3 C 128
07
AC7
SOFTWARE
HIS A:60 , ASP A:91 , VAL A:92
BINDING SITE FOR RESIDUE NO3 A 130
08
AC8
SOFTWARE
TRP A:28 , GLY C:25 , ARG C:26 , THR C:27 , TRP C:28 , HOH C:160 , LYS D:88
BINDING SITE FOR RESIDUE NO3 C 129
09
AC9
SOFTWARE
THR C:74 , ARG C:75 , ARG C:115 , PRO C:116 , HOH C:155 , ARG D:43
BINDING SITE FOR RESIDUE NO3 C 130
10
BC1
SOFTWARE
PRO B:77 , GLY B:78 , ARG B:82 , VAL B:83 , ARG B:84 , ARG D:82 , THR D:96 , HOH D:192
BINDING SITE FOR RESIDUE NO3 B 122
11
BC2
SOFTWARE
SER A:58 , THR A:59 , VAL A:92 , ILE A:94
BINDING SITE FOR RESIDUE GOL A 131
12
BC3
SOFTWARE
TYR B:102 , ILE B:103 , PRO C:61
BINDING SITE FOR RESIDUE GOL B 123
13
BC4
SOFTWARE
TYR D:102 , ILE D:103 , HOH D:171
BINDING SITE FOR RESIDUE GOL D 124
14
BC5
SOFTWARE
HIS A:60 , ALA A:62
BINDING SITE FOR RESIDUE GOL A 132
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rpr2_2zaeD01 (D:21-102)
1b: PFAM_Rpr2_2zaeD02 (D:21-102)
2a: PFAM_UPF0086_2zaeC01 (C:37-121)
2b: PFAM_UPF0086_2zaeC02 (C:37-121)
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Clans
(
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Rpr2]
(3)
Family
:
Rpr2
(3)
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
(2)
1a
Rpr2-2zaeD01
D:21-102
1b
Rpr2-2zaeD02
D:21-102
Clan
:
no clan defined [family: UPF0086]
(5)
Family
:
UPF0086
(5)
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
(2)
2a
UPF0086-2zaeC01
C:37-121
2b
UPF0086-2zaeC02
C:37-121
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Asym.Unit (84 KB)
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