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2Z9L
Asym. Unit
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Asym.Unit (109 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF SARS-COV 3C-LIKE PROTEASE WITH JMF1586
Authors
:
C. C. Lee, A. H. Wang
Date
:
20 Sep 07 (Deposition) - 25 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. C. Lee, C. J. Kuo, M. F. Hsu, P. H. Liang, J. M. Fang, J. J. Shie, A. H. Wang
Structural Basis Of Mercury- And Zinc-Conjugated Complexes As Sars-Cov 3C-Like Protease Inhibitors.
Febs Lett. V. 581 5454 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: DIAMINOZINC (DAZa)
1b: DIAMINOZINC (DAZb)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DAZ
2
Ligand/Ion
DIAMINOZINC
2
DMS
4
Ligand/Ion
DIMETHYL SULFOXIDE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE B:140 , ASN B:142 , CYS B:145 , HIS B:163
BINDING SITE FOR RESIDUE DMS B 603
2
AC2
SOFTWARE
PHE A:140 , LEU A:141 , ASN A:142 , SER A:144 , CYS A:145 , HIS A:163 , HIS A:172
BINDING SITE FOR RESIDUE DMS A 604
3
AC3
SOFTWARE
MET A:6 , ASP A:295 , ARG A:298 , HOH A:753 , SER B:123
BINDING SITE FOR RESIDUE DMS A 605
4
AC4
SOFTWARE
SER A:123 , MET B:6 , PHE B:8 , GLN B:127 , ARG B:298 , HOH B:744
BINDING SITE FOR RESIDUE DMS B 606
5
AC5
SOFTWARE
HIS A:41 , CYS A:145 , HOH A:926
BINDING SITE FOR RESIDUE DAZ A 701
6
AC6
SOFTWARE
HIS B:41 , CYS B:145 , HOH B:814
BINDING SITE FOR RESIDUE DAZ B 702
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_R1AB_CVHSA_047 (Q189P, chain A/B, )
2: VAR_R1A_CVHSA_047 (Q189P, chain A/B, )
3: VAR_R1AB_CVHSA_048 (D248E, chain A/B, )
4: VAR_R1A_CVHSA_048 (D248E, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_R1AB_CVHSA_047
*
Q
3429
P
R1AB_CVHSA
---
---
A/B
Q
189
P
2
UniProt
VAR_R1A_CVHSA_047
*
Q
3429
P
R1A_CVHSA
---
---
A/B
Q
189
P
3
UniProt
VAR_R1AB_CVHSA_048
*
D
3488
E
R1AB_CVHSA
---
---
A/B
D
248
E
4
UniProt
VAR_R1A_CVHSA_048
*
D
3488
E
R1A_CVHSA
---
---
A/B
D
248
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: M_PRO (A:1-305,B:1-301,A:1-305,B:1-301)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
M_PRO
PS51442
Coronavirus main protease (M-pro) domain profile.
R1A_CVHSA
3241-3546
2
A:1-305
B:1-301
R1AB_CVHSA
3241-3546
2
A:1-305
B:1-301
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2z9la_ (A:)
1b: SCOP_d2z9lb_ (B:)
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Classes
(
)
(
)
Folds
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
(75)
SARS coronavirus [TaxId: 227859]
(65)
1a
d2z9la_
A:
1b
d2z9lb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C30_2z9lB01 (B:29-301)
1b: PFAM_Peptidase_C30_2z9lB02 (B:29-301)
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Peptidase_C30
(30)
Human SARS coronavirus (SARS-CoV) (Severe acute respiratory syndrome coronavirus)
(24)
1a
Peptidase_C30-2z9lB01
B:29-301
1b
Peptidase_C30-2z9lB02
B:29-301
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Asymmetric Unit 1
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Asym.Unit (109 KB)
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