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2Z8L
Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE STAPHYLOCOCCAL SUPERANTIGEN-LIKE PROTEIN SSL5 AT PH 4.6 COMPLEXED WITH SIALYL LEWIS X
Authors
:
H. M. Baker, I. Basu, M. C. Chung, T. Caradoc Davies, J. D. Fraser, E. N. B
Date
:
06 Sep 07 (Deposition) - 27 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ob Fold, B-Grasp, Sugar Binding Protein
(Keyword Search:
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Reference
:
H. M. Baker, I. Basu, M. C. Chung, T. Caradoc-Davies, J. D. Fraser, E. N. Baker
Crystal Structures Of The Staphylococcal Toxin Ssl5 In Complex With Sialyl Lewis X Reveal A Conserved Binding Site That Shares Common Features With Viral And Bacterial Sialic Acid Binding Proteins
J. Mol. Biol. V. 374 1298 2007
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Hetero Components
(6, 6)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
2a: BETA-D-GALACTOSE (GALa)
3a: GLYCEROL (GOLa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5a: PHOSPHATE ION (PO4a)
6a: O-SIALIC ACID (SIAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
2
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
3
GOL
1
Ligand/Ion
GLYCEROL
4
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PO4
1
Ligand/Ion
PHOSPHATE ION
6
SIA
1
Ligand/Ion
O-SIALIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:137 , TYR A:173 , TYR A:174 , THR A:175 , ARG A:186 , ASP A:189 , GAL A:602 , NAG A:603 , HOH A:644 , HOH A:658 , HOH A:716
BINDING SITE FOR RESIDUE SIA A 601
2
AC2
SOFTWARE
ASP A:104 , TYR A:105 , GLN A:183 , HIS A:185 , ARG A:186 , SIA A:601 , GAL A:602 , FUC A:604
BINDING SITE FOR RESIDUE NAG A 603
3
AC3
SOFTWARE
GLU A:177 , GLN A:183 , ARG A:186 , SIA A:601 , NAG A:603 , FUC A:604 , HOH A:640 , HOH A:657
BINDING SITE FOR RESIDUE GAL A 602
4
AC4
SOFTWARE
GLU A:177 , LYS A:180 , GLN A:183 , GAL A:602 , NAG A:603 , HOH A:659 , HOH A:688
BINDING SITE FOR RESIDUE FUC A 604
5
AC5
SOFTWARE
ASP A:74 , LYS A:97 , ASN A:98 , HOH A:651
BINDING SITE FOR RESIDUE PO4 A 605
6
AC6
SOFTWARE
HIS A:128 , TYR A:131 , LYS A:132 , VAL A:135 , GLU A:139 , LEU A:140 , LYS A:143 , HOH A:664
BINDING SITE FOR RESIDUE GOL A 606
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2z8la1 (A:13-100)
2a: SCOP_d2z8la2 (A:101-204)
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Classes
(
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Superantigen toxins, N-terminal domain
(91)
Protein domain
:
Superantigen-like protein SET3
(3)
Staphylococcus aureus [TaxId: 1280]
(3)
1a
d2z8la1
A:13-100
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Superantigen toxins, C-terminal domain
(103)
Family
:
Superantigen toxins, C-terminal domain
(94)
Protein domain
:
Superantigen-like protein SET3
(3)
Staphylococcus aureus [TaxId: 1280]
(3)
2a
d2z8la2
A:101-204
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2z8lA01 (A:13-22,A:98-204)
2a: CATH_2z8lA02 (A:23-97)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.120, no name defined]
(91)
Staphylococcus aureus. Organism_taxid: 1280. Strain: gl10.
(2)
1a
2z8lA01
A:13-22,A:98-204
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Staphylococcus aureus. Organism_taxid: 1280. Strain: gl10.
(2)
2a
2z8lA02
A:23-97
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Stap_Strp_tox_C_2z8lA01 (A:111-204)
2a: PFAM_DUF1954_2z8lA02 (A:15-98)
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Clans
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Clan
:
Ant-toxin_C
(48)
Family
:
Stap_Strp_tox_C
(48)
Staphylococcus aureus
(41)
1a
Stap_Strp_tox_C-2z8lA01
A:111-204
Clan
:
no clan defined [family: DUF1954]
(9)
Family
:
DUF1954
(9)
Staphylococcus aureus
(8)
2a
DUF1954-2z8lA02
A:15-98
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Chain A
Asymmetric Unit 1
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