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2Z8G
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
ASPERGILLUS NIGER ATCC9642 ISOPULLULANASE COMPLEXED WITH ISOPANOSE
Authors
:
M. Mizuno, A. Koide, A. Yamamura, H. Akeboshi, H. Yoshida, S. Kamitori, A. Nishikawa, T. Tonozuka
Date
:
05 Sep 07 (Deposition) - 18 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Isopullulanase, Gh49, Dextranase, Pullulan, Beta-Helix, Glycoprotein, Glycosidase, Hydrolase, Secreted
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Mizuno, A. Koide, A. Yamamura, H. Akeboshi, H. Yoshida, S. Kamitori Y. Sakano, A. Nishikawa, T. Tonozuka
Crystal Structure Of Aspergillus Niger Isopullulanase, A Member Of Glycoside Hydrolase Family 49
J. Mol. Biol. V. 376 210 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 29)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
GLC
4
Ligand/Ion
ALPHA-D-GLUCOSE
3
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:24 , PRO A:245 , HOH A:1228 , HOH A:1314 , HOH A:1361
BINDING SITE FOR RESIDUE NAG A 1000
02
AC2
SOFTWARE
ASN A:25 , SER A:26 , GLN A:27 , ASN A:94 , SER A:164 , GLU A:174 , HOH A:1148 , HOH A:1152 , HOH A:1165 , HOH A:1184 , HOH A:1333 , HOH A:1639 , HOH A:1645
BINDING SITE FOR RESIDUE NAG A 1001
03
AC3
SOFTWARE
LEU A:54 , ARG A:114 , ASN A:115 , SER A:118 , HOH A:1370 , HOH A:1610 , GLY B:304 , ASN B:305
BINDING SITE FOR RESIDUE NAG A 1002
04
AC4
SOFTWARE
ASN A:210 , ASP A:230 , HOH A:1082 , HOH A:1117 , HOH A:1222 , HOH A:1362 , HOH A:1540 , HOH A:1631 , ASN B:138 , GLN B:139
BINDING SITE FOR RESIDUE NAG A 1003
05
AC5
SOFTWARE
ASN A:305 , HOH A:1211 , HOH A:1391 , THR B:40 , GLN B:41 , NAG B:1002
BINDING SITE FOR RESIDUE NAG A 1004
06
AC6
SOFTWARE
ASN A:381 , HOH A:1392 , SER B:26 , PHE B:184
BINDING SITE FOR RESIDUE NAG A 1005
07
AC7
SOFTWARE
TYR A:440 , ASN A:448 , THR A:451 , HOH A:1276 , HOH A:1438 , HOH A:1608
BINDING SITE FOR RESIDUE NAG A 1006
08
AC8
SOFTWARE
ASN A:409 , ASN A:460 , HOH A:1208 , HOH A:1532 , TYR B:147
BINDING SITE FOR RESIDUE NAG A 1007
09
AC9
SOFTWARE
ASN A:465 , ASN A:491 , HOH A:1245 , HOH A:1311 , HOH A:1463
BINDING SITE FOR RESIDUE NAG A 1008
10
BC1
SOFTWARE
ALA A:425 , ASN A:503 , HOH A:1354 , HOH A:1357 , HOH B:1249
BINDING SITE FOR RESIDUE NAG A 1009
11
BC2
SOFTWARE
ASN A:535 , HOH A:1385 , HOH A:1482 , ASN B:120 , SER B:121 , ASN B:122 , TYR B:136 , HOH B:1415
BINDING SITE FOR RESIDUE NAG A 1010
12
BC3
SOFTWARE
ASN A:453 , ASN A:455 , ASP A:514 , ASN A:516 , ASN A:517 , HOH A:1529
BINDING SITE FOR RESIDUE NAG A 1011
13
BC4
SOFTWARE
ASN B:24 , PRO B:221 , HOH B:1388
BINDING SITE FOR RESIDUE NAG B 1000
14
BC5
SOFTWARE
ASP A:372 , VAL A:394 , TRP A:402 , ASN A:428 , PRO A:442 , ASP A:443 , HOH A:1083 , HOH A:1649 , HOH A:1655 , GLC A:2002
BINDING SITE FOR RESIDUE GLC A 2001
15
BC6
SOFTWARE
VAL A:394 , GLY A:426 , ASN A:427 , HOH A:1237 , HOH A:1654 , GLC A:2001 , BGC A:2003
BINDING SITE FOR RESIDUE GLC A 2002
16
BC7
SOFTWARE
GLN A:88 , TYR A:89 , THR A:90 , GLN A:91 , GLY A:350 , HOH A:1013 , HOH A:1650 , HOH A:1651 , HOH A:1652 , GLC A:2002
BINDING SITE FOR RESIDUE BGC A 2003
17
BC8
SOFTWARE
ASN B:94 , SER B:164 , GLU B:174 , HOH B:1211 , HOH B:1231 , HOH B:1248 , HOH B:1413 , HOH B:1448
BINDING SITE FOR RESIDUE NAG B 1001
18
BC9
SOFTWARE
NAG A:1004 , LEU B:54 , ARG B:114 , ASN B:115 , SER B:118 , HOH B:1349
BINDING SITE FOR RESIDUE NAG B 1002
19
CC1
SOFTWARE
HIS A:231 , GLU A:254 , PRO A:281 , TYR A:285 , HOH A:1315 , HOH A:1406 , ASN B:138 , HOH B:1220
BINDING SITE FOR RESIDUE NAG B 1003
20
CC2
SOFTWARE
GLN A:139 , LEU B:207 , ASN B:210 , ASP B:230 , HOH B:1121 , HOH B:1145 , HOH B:1157 , HOH B:1463
BINDING SITE FOR RESIDUE NAG B 1004
21
CC3
SOFTWARE
GLN A:27 , HIS A:106 , HOH A:1633 , ASN B:305 , HOH B:1471
BINDING SITE FOR RESIDUE NAG B 1005
22
CC4
SOFTWARE
ASN B:381 , HOH B:1434 , HOH B:1440
BINDING SITE FOR RESIDUE NAG B 1006
23
CC5
SOFTWARE
TYR B:440 , ASN B:448 , THR B:451 , HOH B:1303
BINDING SITE FOR RESIDUE NAG B 1007
24
CC6
SOFTWARE
GLY B:452 , ASN B:453 , ASN B:455 , ASP B:514 , ASN B:516 , HOH B:1475
BINDING SITE FOR RESIDUE NAG B 1008
25
CC7
SOFTWARE
ASN B:409 , ASN B:460 , HOH B:1140 , HOH B:1177 , HOH B:1230 , HOH B:1387
BINDING SITE FOR RESIDUE NAG B 1009
26
CC8
SOFTWARE
ASN B:465 , LYS B:490 , ASN B:491 , HOH B:1128 , HOH B:1280 , HOH B:1379
BINDING SITE FOR RESIDUE NAG B 1010
27
CC9
SOFTWARE
ASP B:372 , VAL B:394 , TRP B:402 , ASN B:428 , PRO B:442 , ASP B:443 , HOH B:683 , HOH B:1130 , HOH B:1522 , GLC B:2002
BINDING SITE FOR RESIDUE GLC B 2001
28
DC1
SOFTWARE
VAL B:394 , GLY B:426 , ASN B:427 , HOH B:1523 , GLC B:2001 , BGC B:2003
BINDING SITE FOR RESIDUE GLC B 2002
29
DC2
SOFTWARE
HOH A:1468 , GLN B:88 , TYR B:89 , THR B:90 , GLN B:91 , GLY B:350 , HOH B:1521 , HOH B:1524 , HOH B:1525 , HOH B:1526 , GLC B:2002
BINDING SITE FOR RESIDUE BGC B 2003
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
[
close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2z8gA02 (A:191-564)
1b: CATH_2z8gB02 (B:191-564)
2a: CATH_2z8gA01 (A:19-189)
2b: CATH_2z8gB01 (B:19-189)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
Pectate Lyase C-like
(105)
Homologous Superfamily
:
Single-stranded right-handed beta-helix, Pectin lyase-like
(73)
Aspergillus niger. Organism_taxid: 5061. Strain: atcc9642.
(1)
1a
2z8gA02
A:191-564
1b
2z8gB02
B:191-564
Architecture
:
Sandwich
(5577)
Topology
:
Dex49a from penicillium minioluteum complex, domain 1
(5)
Homologous Superfamily
:
Dex49a from penicillium minioluteum complex, domain 1
(5)
Aspergillus niger. Organism_taxid: 5061. Strain: atcc9642.
(1)
2a
2z8gA01
A:19-189
2b
2z8gB01
B:19-189
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_49_2z8gB01 (B:20-563)
1b: PFAM_Glyco_hydro_49_2z8gB02 (B:20-563)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Pec_lyase
(42)
Family
:
Glyco_hydro_49
(3)
Aspergillus niger
(3)
1a
Glyco_hydro_49-2z8gB01
B:20-563
1b
Glyco_hydro_49-2z8gB02
B:20-563
[
close Pfam info
]
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Asym.Unit (210 KB)
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