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2Z86
Asym. Unit
Info
Asym.Unit (418 KB)
Biol.Unit 1 (206 KB)
Biol.Unit 2 (209 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHONDROITIN POLYMERASE FROM ESCHERICHIA COLI STRAIN K4 (K4CP) COMPLEXED WITH UDP-GLCUA AND UDP
Authors
:
T. Osawa, N. Sugiura, H. Shimada, R. Hirooka, A. Tsuji, M. Kimura, K. Kimata, Y. Kakuta
Date
:
03 Sep 07 (Deposition) - 16 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Gt-A, Glycosyltransferase A, Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Osawa, N. Sugiura, H. Shimada, R. Hirooka, A. Tsuji, M. Kimura, K. Kimata, Y. Kakuta
Structural Basis For Glycosaminoglycan Synthetic Reaction By Chondroitin Polymerase
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
2a: URIDINE-5'-DIPHOSPHATE (UDPa)
2b: URIDINE-5'-DIPHOSPHATE (UDPb)
3a: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAa)
3b: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAb)
3c: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAc)
3d: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAd)
3e: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAe)
3f: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
8
Ligand/Ion
MANGANESE (II) ION
2
UDP
2
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
3
UGA
6
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:161 , ASP A:241 , HIS A:386 , HOH A:790
BINDING SITE FOR RESIDUE MN A 1
02
AC2
SOFTWARE
ASP A:521
BINDING SITE FOR RESIDUE MN A 2
03
AC3
SOFTWARE
ASP B:241 , HIS B:386 , HOH B:820
BINDING SITE FOR RESIDUE MN B 3
04
AC4
SOFTWARE
ASP B:521 , HIS B:631 , HOH B:821 , HOH B:822
BINDING SITE FOR RESIDUE MN B 4
05
AC5
SOFTWARE
ASP C:241 , HIS C:386 , HOH C:853
BINDING SITE FOR RESIDUE MN C 5
06
AC6
SOFTWARE
ASP C:521 , HIS C:631 , HOH C:795
BINDING SITE FOR RESIDUE MN C 6
07
AC7
SOFTWARE
ASP D:241 , HIS D:386 , HOH D:807
BINDING SITE FOR RESIDUE MN D 7
08
AC8
SOFTWARE
ASP D:521 , HIS D:631
BINDING SITE FOR RESIDUE MN D 8
09
AC9
SOFTWARE
PRO B:157 , THR B:158 , TYR B:159 , ARG B:161 , ASP B:188 , TYR B:217 , LEU B:219 , ASP B:239 , CYS B:240 , ASP B:241 , HIS B:386 , HOH B:796 , HOH B:798 , HOH B:820
BINDING SITE FOR RESIDUE UDP B 1
10
BC1
SOFTWARE
ALA B:440 , TYR B:441 , ASP B:469 , ASN B:496 , GLY B:498 , ILE B:499 , GLN B:517 , ASP B:519 , SER B:520 , ASP B:521 , HIS B:581 , ALA B:603 , ASP B:605 , ARG B:628 , HIS B:631 , HOH B:730 , HOH B:822
BINDING SITE FOR RESIDUE UGA B 683
11
BC2
SOFTWARE
PRO D:157 , THR D:158 , TYR D:159 , ARG D:161 , ASP D:188 , GLY D:216 , TYR D:217 , LEU D:219 , ARG D:223 , ASP D:239 , ASP D:241 , ARG D:268 , GLY D:335 , GLU D:361 , ASP D:362 , HIS D:386 , HOH D:775 , HOH D:780 , HOH D:787 , HOH D:807
BINDING SITE FOR RESIDUE UGA D 683
12
BC3
SOFTWARE
PRO D:439 , TYR D:441 , ASP D:469 , ASN D:496 , GLY D:498 , ILE D:499 , ALA D:502 , GLN D:517 , ASP D:519 , SER D:520 , ASP D:521 , HIS D:581 , ARG D:583 , ASN D:602 , ALA D:603 , ASP D:605 , ARG D:628 , HOH D:776 , HOH D:802
BINDING SITE FOR RESIDUE UGA D 684
13
BC4
SOFTWARE
PRO C:157 , THR C:158 , TYR C:159 , ARG C:161 , ASP C:188 , TYR C:217 , LEU C:219 , ASP C:239 , CYS C:240 , ASP C:241 , HIS C:386 , HOH C:819 , HOH C:853
BINDING SITE FOR RESIDUE UDP C 1
14
BC5
SOFTWARE
PRO C:439 , TYR C:441 , ASP C:469 , ASN C:496 , GLY C:498 , ILE C:499 , ALA C:502 , GLN C:517 , ASP C:519 , SER C:520 , ASP C:521 , HIS C:581 , ASN C:602 , ALA C:603 , ASP C:605 , ARG C:628 , HIS C:631 , HOH C:787 , HOH C:795 , HOH C:811
BINDING SITE FOR RESIDUE UGA C 683
15
BC6
SOFTWARE
PRO A:157 , THR A:158 , TYR A:159 , ARG A:161 , ASP A:188 , GLY A:216 , TYR A:217 , LEU A:219 , ARG A:223 , ASP A:239 , CYS A:240 , ARG A:268 , GLU A:361 , ASP A:362 , HIS A:386 , HOH A:735
BINDING SITE FOR RESIDUE UGA A 683
16
BC7
SOFTWARE
PRO A:439 , TYR A:441 , ASP A:469 , ASN A:496 , ILE A:499 , GLN A:517 , ASP A:519 , SER A:520 , HIS A:581 , ARG A:583 , ASN A:602 , ALA A:603 , ASP A:605
BINDING SITE FOR RESIDUE UGA A 684
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Glycos_transf_2_2z86D01 (D:435-592)
1b: PFAM_Glycos_transf_2_2z86D02 (D:435-592)
1c: PFAM_Glycos_transf_2_2z86D03 (D:435-592)
1d: PFAM_Glycos_transf_2_2z86D04 (D:435-592)
1e: PFAM_Glycos_transf_2_2z86D05 (D:435-592)
1f: PFAM_Glycos_transf_2_2z86D06 (D:435-592)
1g: PFAM_Glycos_transf_2_2z86D07 (D:435-592)
1h: PFAM_Glycos_transf_2_2z86D08 (D:435-592)
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Clans
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Organisms
(
)
(
)
Clan
:
GT-A
(172)
Family
:
Glycos_transf_2
(8)
Escherichia coli
(2)
1a
Glycos_transf_2-2z86D01
D:435-592
1b
Glycos_transf_2-2z86D02
D:435-592
1c
Glycos_transf_2-2z86D03
D:435-592
1d
Glycos_transf_2-2z86D04
D:435-592
1e
Glycos_transf_2-2z86D05
D:435-592
1f
Glycos_transf_2-2z86D06
D:435-592
1g
Glycos_transf_2-2z86D07
D:435-592
1h
Glycos_transf_2-2z86D08
D:435-592
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (418 KB)
Header - Asym.Unit
Biol.Unit 1 (206 KB)
Header - Biol.Unit 1
Biol.Unit 2 (209 KB)
Header - Biol.Unit 2
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