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Asym. Unit
Info
Asym.Unit (191 KB)
Biol.Unit 1 (184 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TLR1-TLR2 HETERODIMER INDUCED BY BINDING OF A TRI-ACYLATED LIPOPEPTIDE
Authors
:
J. O. Lee, M. S. Jin, S. E. Kim, J. Y. Heo
Date
:
29 Aug 07 (Deposition) - 02 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Tlr2, Tlr1, Pam3Csk4, Lipopeptide, Innate Immunity, Glycoprotein, Immune Response, Inflammatory Response, Leucine-Rich Repeat, Membrane, Receptor, Transmembrane, Cytoplasmic Vesicle, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Jin, S. E. Kim, J. Y. Heo, M. E. Lee, H. M. Kim, S. G. Paik, H. Lee, J. O. Lee
Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide
Cell(Cambridge, Mass. ) V. 130 1071 2007
[
close entry info
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
4b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
5a: (2R)-3-{[(2S)-3-HYDROXY-2-(PALMITO... (PCJa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5
PCJ
1
Ligand/Ion
(2R)-3-{[(2S)-3-HYDROXY-2-(PALMITOYLAMINO)PROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NDG A:803 , SER B:32 , LYS B:33 , ASN B:51 , GLN B:54 , ILE B:75
BINDING SITE FOR RESIDUE NAG A 801
02
AC2
SOFTWARE
NAG A:801 , MAN A:804 , LYS B:33 , GLN B:54
BINDING SITE FOR RESIDUE NDG A 803
03
AC3
SOFTWARE
NDG A:803
BINDING SITE FOR RESIDUE MAN A 804
04
AC4
SOFTWARE
NAG A:823 , HOH A:940 , TYR B:275 , ASN B:330 , HIS B:352
BINDING SITE FOR RESIDUE NAG A 821
05
AC5
SOFTWARE
NAG A:821 , MAN A:824 , GLN B:402
BINDING SITE FOR RESIDUE NAG A 823
06
AC6
SOFTWARE
NAG A:823
BINDING SITE FOR RESIDUE MAN A 824
07
AC7
SOFTWARE
NAG A:833 , SER B:406 , GLN B:407 , ASN B:429 , SER B:431 , ASP B:451
BINDING SITE FOR RESIDUE NAG A 831
08
AC8
SOFTWARE
NAG A:831 , BMA A:834 , HOH A:937 , HIS B:453
BINDING SITE FOR RESIDUE NAG A 833
09
AC9
SOFTWARE
NAG A:833
BINDING SITE FOR RESIDUE BMA A 834
10
AD1
SOFTWARE
GLN A:198 , ASN A:199
BINDING SITE FOR RESIDUE NDG A 901
11
BC2
SOFTWARE
PRO A:387 , GLN A:390 , ASN A:414 , HOH A:968 , HIS B:38
BINDING SITE FOR RESIDUE NAG A 911
12
BC3
SOFTWARE
ARG A:395 , SER A:421 , TYR A:440 , ASN A:442 , ASP A:463 , NAG A:923
BINDING SITE FOR RESIDUE NAG A 921
13
BC4
SOFTWARE
NAG A:921 , BMA A:924
BINDING SITE FOR RESIDUE NAG A 923
14
BC5
SOFTWARE
NAG A:923
BINDING SITE FOR RESIDUE BMA A 924
15
BC6
SOFTWARE
ASN B:163
BINDING SITE FOR RESIDUE NAG B 811
16
BC7
SOFTWARE
MET A:270 , LEU A:282 , LEU A:312 , PHE A:322 , PHE A:325 , TYR A:326 , ASP A:327 , LEU A:328 , LEU A:334 , SER A:346 , LYS A:347 , VAL A:348 , PHE A:349 , LEU A:350 , VAL A:351 , PRO A:352 , PHE B:312 , GLY B:313 , GLN B:316 , HOH B:820 , SER C:2 , LYS C:3
BINDING SITE FOR RESIDUE PCJ C 1
[
close Site info
]
SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_066340 (S44P, chain B, )
02: VAR_066341 (I75T, chain B, )
03: VAR_031916 (R80T, chain B, )
04: VAR_066349 (N89D, chain A, )
05: VAR_018474 (H118Y, chain B, )
06: VAR_031917 (N248S, chain B, )
07: VAR_031918 (H305L, chain B, )
08: VAR_031919 (P315L, chain B, )
09: VAR_066342 (H352N, chain B, )
10: VAR_026765 (T411I, chain A, )
11: VAR_066343 (I460V, chain B, )
12: VAR_066344 (L514A, chain B, )
13: VAR_052358 (L518R, chain B, )
14: VAR_066350 (Q557H, chain A, )
15: VAR_024663 (G564H, chain A, )
16: VAR_066351 (V569R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_066340
S
44
P
TLR1_HUMAN
Polymorphism
76600635
B
S
44
P
02
UniProt
VAR_066341
I
75
T
TLR1_HUMAN
Polymorphism
137853170
B
I
75
T
03
UniProt
VAR_031916
R
80
T
TLR1_HUMAN
Polymorphism
5743611
B
R
80
T
04
UniProt
VAR_066349
N
89
D
TLR2_HUMAN
Polymorphism
---
A
N
89
D
05
UniProt
VAR_018474
H
118
Y
TLR1_HUMAN
Polymorphism
5743612
B
H
118
Y
06
UniProt
VAR_031917
N
248
S
TLR1_HUMAN
Polymorphism
4833095
B
N
248
S
07
UniProt
VAR_031918
H
305
L
TLR1_HUMAN
Polymorphism
3923647
B
H
305
L
08
UniProt
VAR_031919
P
315
L
TLR1_HUMAN
Polymorphism
5743613
B
P
315
L
09
UniProt
VAR_066342
H
352
N
TLR1_HUMAN
Polymorphism
76796448
B
H
352
N
10
UniProt
VAR_026765
T
411
I
TLR2_HUMAN
Polymorphism
5743699
A
T
411
I
11
UniProt
VAR_066343
I
460
V
TLR1_HUMAN
Polymorphism
137853171
B
I
460
V
12
UniProt
VAR_066344
V
542
A
TLR1_HUMAN
Polymorphism
137853172
B
L
514
A
13
UniProt
VAR_052358
L
631
R
TLR1_HUMAN
Polymorphism
5743619
B
L
518
R
14
UniProt
VAR_066350
R
571
H
TLR2_HUMAN
Polymorphism
61735277
A
Q
557
H
15
UniProt
VAR_024663
P
631
H
TLR2_HUMAN
Polymorphism
5743704
A
G
564
H
16
UniProt
VAR_066351
S
636
R
TLR2_HUMAN
Polymorphism
137853177
A
V
569
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 23)
Info
All PROSITE Patterns/Profiles
1: LRR (B:46-67|B:70-91|B:94-115|B:116-136...)
2: TIR (B:523-544,A:572-572)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
TLR1_HUMAN
46-67
70-91
94-115
116-136
373-394
399-420
424-444
446-467
469-490
491-512
10
B:46-67
B:70-91
B:94-115
B:116-136
B:373-394
B:399-420
B:424-444
B:446-467
B:469-484
B:488-488
TLR2_HUMAN
53-74
77-98
101-122
125-146
361-381
388-409
414-435
478-499
458-477
437-457
500-521
11
A:53-74
A:77-98
A:101-122
A:125-146
A:361-381
A:388-409
A:414-435
A:478-499
A:458-477
A:437-457
A:500-520
2
TIR
PS50104
TIR domain profile.
TLR1_HUMAN
635-779
1
B:523-544
TLR2_HUMAN
639-784
1
A:572-572
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.1 (A:27-575 (gaps))
Exon 2.6f (B:25-544 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary 2.5b/2.6f
4: Boundary 2.6f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000260010
1
ENSE00000927464
chr4:
154624015-154627238
3224
TLR2_HUMAN
1-799
799
1
A:27-575 (gaps)
616
2.3d
ENST00000308979
3d
ENSE00001245751
chr4:
38806412-38806375
38
TLR1_HUMAN
-
0
0
-
-
2.4a
ENST00000308979
4a
ENSE00001245741
chr4:
38806003-38805927
77
TLR1_HUMAN
-
0
0
-
-
2.5b
ENST00000308979
5b
ENSE00001245734
chr4:
38802569-38802478
92
TLR1_HUMAN
-
0
0
-
-
2.6f
ENST00000308979
6f
ENSE00001208820
chr4:
38800519-38797880
2640
TLR1_HUMAN
1-809
809
1
B:25-544 (gaps)
675
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 7)
Info
all PFAM domains
1a: PFAM_LRR_7_2z7xA01 (A:477-493)
2a: PFAM_LRR_8_2z7xB01 (B:445-476)
2b: PFAM_LRR_8_2z7xB02 (B:445-476)
2c: PFAM_LRR_8_2z7xB03 (B:445-476)
2d: PFAM_LRR_8_2z7xA02 (A:387-448)
2e: PFAM_LRR_8_2z7xA03 (A:387-448)
2f: PFAM_LRR_8_2z7xA04 (A:387-448)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LRR
(77)
Family
:
LRR_7
(15)
Homo sapiens (Human)
(11)
1a
LRR_7-2z7xA01
A:477-493
Family
:
LRR_8
(41)
Homo sapiens (Human)
(24)
2a
LRR_8-2z7xB01
B:445-476
2b
LRR_8-2z7xB02
B:445-476
2c
LRR_8-2z7xB03
B:445-476
2d
LRR_8-2z7xA02
A:387-448
2e
LRR_8-2z7xA03
A:387-448
2f
LRR_8-2z7xA04
A:387-448
[
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]
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